Populus nigra (Lombardy poplar): 133675512
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Entry
133675512 CDS
T10372
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
pnz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133675512
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133675512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133675512
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133675512
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133675512
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133675512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_EIPR1
EIF3I
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_TEP1_C
WD40_like
Beta-prop_WDR75_1st
WD40_RFWD3
YNR034W-A-like
Motif
Other DBs
NCBI-GeneID:
133675512
NCBI-ProteinID:
XP_061952899
LinkDB
All DBs
Position
16:14258268..14261029
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AA seq
393 aa
AA seq
DB search
MKNFSSKFHPYSHHHTQESQNQETRKQKETIEEEEEEERARCEWDFSLSTIVSSSNDNNT
ASISDALGVIEFDQTNSIIATGGIARKIRIYSLESLLPHESTSQDVHDTIFLDHARARDY
YICTPAKLSSFRWKPRSDGRVLGSGDYDGVVMEYNLERRIPIFERDEHGGRRVWSVDYSH
CDPTMGASGSDDGTMQMWDTRSESGECVATVQPSVRRSAVCCVEFNPFGGPIVAIGCADS
KVYGYDLRMMASPVFVLDGHRKTVTYIKFLDNVTLVSASIDGCLKLWNSDNSNVIRTYHG
HVNNRNFVGLSVWRNGGLLGCGSENNKVFVYDKRWSEPVWVRESSPMGKDGCGSGFVSSV
CWRQVGEDQCTLVTGGSDGILQVFRGKRKTRTG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacttctccagtaaattccatccttatagtcatcaccacacacaagaatctcaa
aaccaagaaacaagaaaacaaaaggaaaccatagaggaggaggaggaagaagaaagagca
aggtgtgaatgggatttcagtctctccacaatagtttcatcaagcaacgataacaacact
gcctccatatcagatgctttaggggtgatcgaattcgaccagacgaatagcatcatcgcc
acaggtggaatagcaagaaagataaggatttatagtctcgagtctctgttaccgcatgaa
agtactagccaagacgtgcatgatactatttttttagaccatgccagggctcgtgactat
tatatttgtaccccagctaagcttagtagtttccgatggaaacccaggtcagacggtcgg
gttctagggtccggagactacgacggggtggtgatggaatataatcttgagaggagaata
ccaatctttgaacgcgatgaacatggcgggcgaagggtttggagtgtggactattcacat
tgcgatccgactatgggtgcatccgggtcggatgatggaaccatgcaaatgtgggacaca
cgcagtgagagtggggaatgcgtggctacggttcaacctagcgtgagacgcagtgccgtc
tgttgcgtggagtttaatccatttggtggaccaatagtagccatcggatgtgctgacagc
aaggtatacgggtatgatcttcgaatgatggctagcccagtatttgttcttgatgggcat
aggaagaccgtgacatacatcaaatttcttgataatgttacattagtatctgctagcatt
gatggatgcttgaagctatggaattcggacaattcgaacgtcattcggacctaccacggg
cacgtcaacaatcggaactttgttggattatcagtgtggaggaatggaggcttgttaggg
tgtggatcagaaaacaataaggtttttgtgtatgacaagagatggagtgaaccagtatgg
gttcgtgagtctagccccatgggcaaagatgggtgtggcagtgggtttgttagtagtgtg
tgctggaggcaagtgggggaagaccaatgcacgcttgtaacaggaggatcagatgggatc
ttgcaagtttttcgaggcaaaaggaagacacggactggataa
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