Populus nigra (Lombardy poplar): 133675686
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Entry
133675686 CDS
T10372
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133675686
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Step II factors
133675686
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
ABC_tran
Sigma54_activ_2
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
133675686
NCBI-ProteinID:
XP_061953122
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All DBs
Position
16:1747211..1752018
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AA seq
1174 aa
AA seq
DB search
MATAAENDAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCETVDEFDAKLK
ENGAEMPDYFVRTLLTIIHAILPPKAEKEGKKDKENDGSGKDSKFKALSIKDSRDRVKEI
DRELEIEAEEKSRRENEDRHRERDNDDRHIERDRRGRDRDRERDRDRDRERERDMYDRDD
RRRDRGRRRDGHDIEDGEGERERRNGRHGYGGVNSNEPELYGVYKGRVSRVMDTGCFVQL
SDFRGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVKVISVSGNKLSLSMRDVDQNSGKDL
LPLKKRDDEDGFRSNALGLSKEGPVMRTGLSGIRIVEEEDTGPSRRPLKRMSSPEKWEAK
QLIASGVLSVQEYPMYDEEIDGLLYQEEGVEEELEIEMNEDEPAFLQGQTRYSVDMSPVK
IFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQ
ELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVL
VVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY
AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKL
VKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITV
LQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRI
FDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASA
KQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLLSFD
FMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDE
ILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFE
NFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGY
RTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVS
DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcagcagaaaacgacgccggattgaagaagctcgagtacctctccctcgtc
tccaaggtctgcagcgaactcgaaactcacttggggtttggagataagatcttagctgag
ttcatcaccgagttaggtcggagttgcgaaacagtagatgagttcgatgcgaagctgaag
gaaaatggagctgaaatgcctgattactttgttcggacattgctgacgattattcacgcg
attttgccgccgaaagcggagaaggaggggaagaaagataaggagaatgatgggtcaggt
aaagattctaaatttaaagctctctcgattaaagatagtagagacagagtgaaagaaatt
gatagggaattggaaattgaagctgaagagaaaagtagaagagagaatgaagacaggcac
agagaaagagataacgatgacagacatatagagagagataggagagggagggatagggat
agagagagggatagggatagagatagggagagagaaagagatatgtatgatagagatgat
aggaggagagatagaggaagaaggagagatgggcatgatatagaggatggtgaaggtgag
agggagagaaggaatgggagacatgggtatggtggtgttaatagtaatgagccggaattg
tatggggtatataaggggagggtgtcgagggtgatggatacaggttgttttgtccagttg
agtgattttagggggaaggagggtttggttcatgtttcacagattgcaactaggagagtt
gggaatgcaaaggacgtggttaagagggaccaggaagtttatgttaaggtgatttcagtc
tcggggaacaagttgagtctttcgatgagggatgttgatcagaatagtgggaaagatttg
cttccattgaagaagagggatgatgaggatggttttaggagcaatgctttgggtttgtct
aaggaggggccggtgatgaggacagggttgtcagggattaggattgtggaggaggaggat
actggtccgtcacggagacctttaaagagaatgagctcgccagagaagtgggaagcaaaa
cagttgattgcttcgggggttttgagtgtgcaagagtaccccatgtatgatgaggaaata
gatgggttgctttatcaagaagagggagttgaggaagagcttgagattgagatgaatgag
gatgagcctgcatttttgcaagggcagactaggtattctgttgatatgtcaccagttaag
atttttaagaatcctgaaggttcgttgagtcgtgcagctgctcttcagtctgcacttata
aaggagaggagagaagtgagggagcagcagcagaggactatgcttgattcaataccaaag
gatcttaatcgtccttgggaagacccaatgcccgagactggcgagaggcatcttgcccag
gagctgcgtggtgttggcttatctgcttatgacatgcctgaatggaagaaggatgcattt
gggaaagcactgacatttgggcagcgatccaagttatctatccaggaacagaggcagagc
ttgccaatttacaaattgaaaaaagagttaattcaggctgtccatgacaatcaggttctg
gtggttattggtgagacaggttcaggtaagactactcaggtgacacagtatcttgctgag
gcaggttataccactaggggtaagattggatgtactcagcctcgtagggtggctgctatg
tctgtagccaagagggtggctgaagagtttggctgtcgtttaggtgaggaagttggctat
gctattcgttttgaggattgcactggaccagatactgtgatcaagtatatgacagatggt
atgctgcttagggagattctgattgatgagaacctttctcagtactcggtgataatgcta
gatgaagctcatgagaggaccattcacactgatgtcctttttgggttgctcaagaaactt
gtgaagagaagacctgatcttcgcttgattgtcacatcagccacactggacgcggagaaa
ttttcagggtatttcttcaactgtaacatattcacgattcctgggagaacatttcctgtg
gagatattgtacaccaaacagccagaaagtgactacttagatgcatctctgattactgtc
ttgcaaatccacttgacagaacctgaaggtgacatacttctattcttgacaggccaggag
gagattgattttgcatgtcaatctctttatgagaggatgaaaggattaggaaaaaatgtt
cctgaattgatcattttgcctgtttatagtgctcttcctagtgaaatgcagtcaagaatc
tttgatcctgccccacctggaaagaggaaggtggttgtggcaactaatattgccgaagcc
tctttgacaattgatggaattttttatgttattgatcctgggtttgccaagcagaacgtg
tataatccaaagcaagggcttgattctctagttataacgccaatttcacaagcatctgcc
aagcaacgagctggacgtgctgggcgtactgggcctggaaaatgttatcgtctctacaca
gaaagtgcataccgcaatgagatgtctcccacctcaattccagaaatccaaagaattaat
cttggattcactacgcttacaatgaaggctatgggaattaatgacctattgtcttttgat
tttatggatccaccttcaccgcaggccctgatttctgccatggaacagctatacagcctt
ggagctctggatgaggaaggacttctgaccaaactagggaggaaaatggcagaatttcct
ctggatccaccattgtctaaaatgttgctggctagtgtagacctcgggtgcagtgatgag
attttgactatgattgccatgatccaaactggtaacatcttttacagacctagagaaaaa
caagctcaggctgatcagaagagggccaagtttttccagcctgagggagaccatctgact
ttgcttgctgtgtacgaggcttggaaagccaagaacttttcaggaccttggtgttttgag
aactttgtccaatcccgatccttgaggagagcacaggatgtcagaaaacagcttctaagc
atcatggataagtataaactagatgttgttagtgctgggaagaattttaccaagataagg
aaagcgattacagctggattctttttccatgcagctagaaaggacccacaggagggttat
cggactttggttgagaaccagccagtttatatccaccccagcagtgctcttttccagaga
caaccagactgggtcatctaccatgagctggtaatgactacaaaagagtatatgcgtgag
gtcacggttatagatcccaaatggcttgtggagctagctcccaggttctttaaagtatca
gatcctacaaaaatgagcaagcgaaagcgtcaagaacggattgaacctctctacgataga
taccacgaacctaattcatggcgtttgagtaaaaggcgagcttaa
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