KEGG   Populus nigra (Lombardy poplar): 133675778
Entry
133675778         CDS       T10372                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    133675778
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133675778
   03009 Ribosome biogenesis [BR:pnz03009]
    133675778
   04131 Membrane trafficking [BR:pnz04131]
    133675778
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pnz04147]
    133675778
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     133675778
Ribosome biogenesis [BR:pnz03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    133675778
Membrane trafficking [BR:pnz04131]
 SNARE
  SNARE associated proteins
   Others
    133675778
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    133675778
Exosome [BR:pnz04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   133675778
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_5 CDC48_2 AAA_33 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase nSTAND3 Mg_chelatase AAA_28 Vps4_C AAA_17 AAA_18 ATPase_2 Parvo_NS1 IstB_IS21 ABC_tran Viral_helicase1 AAA_7 AAA_lid_PRS2_C NACHT NB-ARC TsaE AAA_24 ResIII DUF815 Zeta_toxin Sigma54_activ_2 Zot
Other DBs
NCBI-GeneID: 133675778
NCBI-ProteinID: XP_061953237
LinkDB
Position
16:10036372..10041116
AA seq 814 aa
MEDPSSSQPSSSTDPKSGKKDFSTAILERKKSPNRLVVDEAINDDNSVVAMHPATMEKLQ
FFRGDTVLIKGKKRRDTVCIVLAEEQCEEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKY
GKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKDDLFLVRGGMRSVEFKVIETDP
GEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK
SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFE
EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN
SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLEKVAKDTHGYVGADL
AALCTEAALQCIREKMDVIDLEDDTIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEV
PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI
ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG
DAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEA
SRLQIFKACLRKSPVSKDVDLTALARYTNGFSGADITEICQRACKYAIRENIEKDIEKEK
RKQENPEAMEEDDVDEVPEIKAAHFEESMKYARRSVSDADIRKYQSFAQTLQQSRGFGTE
FRFPDRPENAAADGGATDPFASATAAADEDDLYS
NT seq 2445 nt   +upstreamnt  +downstreamnt
atggaggatccaagctctagccagccctcctcttccactgacccgaaaagtggtaagaaa
gatttttcgactgcgattttagagcgaaagaagtctcccaatcgtcttgttgttgacgag
gcgatcaatgatgataactctgtggttgctatgcatcctgctacaatggagaagcttcag
ttttttcgtggtgacactgtgctaattaagggaaagaagcgtagagacactgtttgcatt
gttcttgctgaggaacaatgtgaggaaccaaaaatcagaatgaataaagttgtcagggct
aatcttagagtccgtcttggtgatgttgtgtctgtccatcaatgtcctgatgtgaagtat
gggaagcgggttcatatccttcctattgatgacactattgagggtgttactggcaatctt
tttgatgcatatttgaagccatatttcttggaatcttaccgccctgttaggaaagatgac
ctcttccttgtcaggggtggcatgcgcagtgtcgagttcaaagtaattgagacagaccct
ggtgaatactgtgttgtggcaccagacaccgagatcttttgtgaaggagagcccatcaaa
cgcgaggatgaagagagattgaatgaagtgggctatgatgatgttgggggtgttaggaaa
caaatggctcagattcgtgagctagttgaacttcctcttagacacccacagcttttcaaa
tcaattggtgtgaaaccaccaaaaggtatattgctgtatggaccacctgggtccggtaaa
actctgattgcaagagctgttgctaatgagacaggggcattcttctttttgattaatggt
cctgagataatgtcaaagctggctggtgagagtgaaagcaacttgaggaaggcgtttgaa
gaagctgaaaagaatgcaccatccataatttttatcgatgagatagattctattgctcct
aagagggaaaagactcacggtgaggtggagaggcgtatagtttcacaacttttgacttta
atggatggccttaagtcacgggcacatgtgattgttatgggggctaccaataggcccaat
agcattgacccagctttgaggagatttgggagatttgatcgagagattgacattggtgtg
ccagatgaagttggacggttggaggtcctcagaattcatactaaaaatatgaaacttgct
gaagaggttgatcttgaaaaagttgcaaaggacacccatggttatgttggtgcagatctt
gcagctctttgtactgaggctgctcttcagtgtattagggagaaaatggatgttattgat
ttggaggatgacacaattgatgccgaggtgttaaactcaatggctgtgactaatgagcac
ttccaaactgcattgggaacttcaaatccatcagccttgcgtgaaacagttgtggaggtt
cctaatgtctcatgggaggatattggtggattggagaatgttaaaagagagcttcaagag
actgtccaatatccagtggagcatcctgagaagtttgagaaatttggcatgtcaccttct
aaaggtgttctcttttatggacctcctggctgtggtaaaaccctacttgcaaaggcaatt
gctaatgaatgccaggccaacttcattagtgtcaagggtcctgagcttctaaccatgtgg
tttggagaaagtgaagcaaatgtgcgggagatatttgacaaagcacggcagtcagcccca
tgtgtacttttctttgacgaacttgattccattgctactcagcgtggcagctctgtagga
gatgctgggggtgctgctgatagagtcttgaatcaacttctgacggaaatggatggcatg
acagcaaagaaaacagtttttatcattggagcaacaaacaggccagatattattgaccca
gcattgcttaggcccgggcgtctggaccagttgatttatattcctcttcctgacgaggct
tcccgtcttcagatatttaaagcatgtttgcggaagtcacctgtttctaaggatgttgac
ctgacagctcttgcacgatatactaatggttttagtggtgctgatatcactgaaatttgt
caacgtgcctgcaaatatgccattagagaaaatattgagaaggatattgagaaggagaaa
aggaagcaagagaatcccgaagcaatggaagaggatgatgttgatgaggtcccagaaata
aaggcagcacattttgaggagtcaatgaaatatgcacgacgaagtgtcagtgatgcagac
atcaggaagtaccaatcttttgctcagaccttgcagcaatctcgtggatttggtaccgag
ttccggtttccagaccgtcctgagaatgctgcagcagatggaggagctacagatcctttt
gcttcagcaactgctgctgccgatgaggatgatctatacagctga

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