Populus nigra (Lombardy poplar): 133675905
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Entry
133675905 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133675905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133675905
03012 Translation factors [BR:
pnz03012
]
133675905
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133675905
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133675905
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133675905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
ATPase
AAA_30
Myosin_head
Motif
Other DBs
NCBI-GeneID:
133675905
NCBI-ProteinID:
XP_061953439
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All DBs
Position
16:complement(3902166..3913268)
Genome browser
AA seq
1202 aa
AA seq
DB search
MPCCIRMNTIMSLRPTSTKTAKSLHFHYKAKTTLKPSLYSSSSFVSVRNHQTLSFTNQPL
PRPLRFRHHGIFSFKCFGVADFHSKKLALPYTRSMQSFNYGRFAYRDVSSDESDYELGSS
QKEMTGSTLDNVDDWKWKLTMLLQSKDQQEVVSREKKDRRDFEHLSAMATRMGLHSRQYS
RIVVFSKVPLPNYRHDLDDKRPQREVILPFGLQREVDAHFKAYISKKPTSRGFFPPNSLS
RSNSGGSIDTDKKIYERPELSVQNSVAMERILSRKSLQLRNQQEKWQESPEGQKMIEFRR
SLPAYKEKEVLLKAVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPR
RISAMAVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLLDRNLKGV
THVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLNAELFSSYFGGAPAIHIHG
FTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKTWKMQKQAQAFKKRKSQIASSVEDAL
EVADFKGCSSRTRESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD
QLQAHPILGDPCRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF
VVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGECYHLYPRCVYDAFAD
YQLPELLRTPLQSLSLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKLIGALDEHEN
LTVLGRHLSVLPVEPKLGKMLILGTIFNCLDPIMTVVAGLSVRDPFLIPFDKKDLAESAK
AQFAGRDCSDHLALVRAYNGWKDAERQQSGHEYCWKNFLSAQTLKAIDSLRKQFFYLLKD
TGLVDKQIENCNSRSIDEHLMRAVICAGLFPGLCSVVNKEKSITLKTMEDGQVLLYSNSV
NAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNIERGGLDGHLKMLGGYLE
FFMKPTLGDMYLSLKRELEELIQNKLLDPKLDIQSHNELLMAIRLLVSEDQCEGRFVFGR
QLPAPSKKAEKAKNVAGDGGDNSKNELQTLLARAGHESPTYKTKQLKNNQFRSTVFFNGL
DFAGQPCSSKKLAEKDAAAAALLWLKGETPSYSRNTDHFSVLLKKSKTTNQNRIPVRGGK
WN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgccttgctgtatcagaatgaacacaatcatgtctctaagacccacttccaccaaaaca
gcaaaatctctccatttccattacaaagctaaaaccacccttaaaccctctttatattct
tcatcatcttttgtttccgttagaaaccaccaaaccctatcttttactaaccagccattg
ccccgccctcttcgattcaggcatcatgggattttttcgttcaagtgttttggtgttgca
gattttcattccaagaaacttgctttgccatataccaggtctatgcagagctttaattat
ggcaggtttgcttaccgggatgtttctagtgatgaatccgattatgaattaggctcctcc
cagaaggaaatgactggctcgacccttgacaacgttgatgattggaaatggaagttaacc
atgcttcttcaaagtaaagatcagcaagaagttgtatccagggagaaaaaggacagacgt
gattttgagcatctatcagctatggcaacccgaatgggtttacacagccgtcaatattca
agaattgttgtgtttagtaaagtccccttgccaaattacagacatgatctggatgataag
cgtccacagagggaggtgatcttaccttttgggttacaaagagaagtagatgctcatttc
aaagcttacatttccaaaaaacccacgagcagaggattttttcctcccaattccttgtca
agatcaaacagtggtgggagtatcgacaccgataaaaaaatctatgagcggccagaactg
tcagtacaaaatagtgttgccatggagagaattcttagtcggaagagtttgcagcttcgt
aatcaacaagaaaagtggcaggaatctcctgagggccaaaagatgattgaatttcgtaga
agccttcctgcatataaagaaaaggaagtgctgttaaaagccgtatctgaaaatcaggtt
attgttgtctctggtgaaactggttgtggtaaaaccacacaacttcctcaatacatacta
gaatctgagattgaagctgctcgcggagctgcatgtagtattatatgtacacagcctaga
agaatatcggctatggctgtttctgaaagagttgctgcagaacgaggggagaaactggga
gaatcagttggttataaagttcggctcgagggtatgagaggaagggacactcgacttcta
ttctgtacgactggcatattgttgaggagattacttctggacagaaatttaaaaggtgta
actcatgtcatcgttgatgagattcatgaacgcggaatgaatgaagattttcttcttatt
gtactgagagatctgcttcctcgtcgaccggagttgagattgattttgatgagtgcaacc
ttaaatgcggagcttttctcttcctactttggcggtgctccagcaattcatattcatggt
tttacatatcctgtccgtgcacattttttagagaatattctcgaaataaccgggtatcgg
ctgactccttacaatcaaatcgacgattatggtcaagaaaagacgtggaaaatgcaaaaa
caagctcaagctttcaaaaagaggaagagccagattgcttcttctgttgaggatgccctt
gaagttgctgactttaaggggtgtagttcacgcactcgggagtctttatcttgttggaat
cctgactcaattggttttaacctcattgagcatgttctttgtcacatagtcaagaaagag
agacctggtgctgtgttggtttttatgactggttgggatgacattaactctttaaaagat
cagctacaagctcatcctatcttgggtgatccttgcagagtattgttactggcctgccat
ggttccatggccagctctgagcagaggttaatatttgataaacccgaagatggagtgagg
aaaattgtcttagctacgaatatggctgagactagtattactatcaatgatgtggtattt
gtggttgattgtggaaaggcaaaggagacatcgtatgatgctttaaataatactccttgt
ttgcttccatcctggatctcaaaggctgctgcccggcaaagaaagggaagagctggtcgt
gttcaacctggtgaatgttatcatctttatcccagatgtgtttatgatgcatttgctgac
tatcaattaccagaacttttgaggacacctttacagtctttgagtttgcaaatcaaaagt
ctccaacttggaagtatatcagagttcctatcaagggccctgcagccaccagagcctcta
tcggttcaaaatgctgttgagtatttgaagttgattggggctttagatgagcatgaaaat
ctgacagtgctaggacgtcatttgtcagtgcttccagttgagcctaagctcgggaaaatg
ctcatattggggaccattttcaactgcctagatccaataatgactgtcgttgctggtctc
agtgttagagatccattcttaataccatttgacaagaaggatcttgcagagtctgcaaaa
gcacaattcgctggtcgtgattgcagtgaccatcttgcacttgtccgggcctataatggt
tggaaagatgcagaaagacaacaatctggtcatgagtactgttggaagaattttctttct
gcacagactctaaaagccattgattccttaaggaaacaattcttttatttgctcaaggat
actggactggttgataagcagatagaaaattgcaattcaaggagcattgatgagcatctt
atgcgagcagtcatctgtgctggcctgttccctggattgtgctctgttgtgaacaaagag
aagtcgataacactgaaaacaatggaggatggccaggtgcttctgtactcgaattctgtg
aatgctggggtgcccaaaattccatacccttggttagttttcaatgaaaaagtgaaagtg
aattcagtttttctccgtgattcaactggtgtttctgattccgtgctgcttttatttgga
ggaaacattgagaggggtggactagatgggcacctaaaaatgttgggaggatacttggaa
ttttttatgaaacccacattaggagatatgtatttaagcttaaaacgtgagcttgaggaa
ctgattcagaataaacttctagatcccaagttggatatacagtcccacaacgagcttctg
atggcaataagattgctggtttcagaggaccaatgtgagggtagatttgtatttggtcga
cagctgccagcaccctcaaagaaggcagaaaaggccaaaaatgttgctggtgatgggggt
gacaattctaagaatgagcttcaaactttacttgccagggcagggcatgaatcacccact
tataagacaaaacaactgaaaaacaaccagttccgttctactgttttctttaacgggctg
gactttgctgggcagccttgcagcagtaagaaacttgcagaaaaggatgcagctgctgca
gctctactgtggttgaagggggagacgccttcgtattccagaaatactgaccacttctcg
gtgcttctgaagaagagcaagaccacaaatcaaaacagaatcccagttcgtggtggtaaa
tggaattag
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