Populus nigra (Lombardy poplar): 133675953
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Entry
133675953 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pnz03009
]
133675953
03036 Chromosome and associated proteins [BR:
pnz03036
]
133675953
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133675953
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133675953
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
133675953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
FlpD
PTPlike_phytase
CMS1
Motif
Other DBs
NCBI-GeneID:
133675953
NCBI-ProteinID:
XP_061953504
LinkDB
All DBs
Position
16:complement(13723654..13729292)
Genome browser
AA seq
687 aa
AA seq
DB search
MPSISLTNTTTATNSPDSKKEKKMKKKVALESQETDPMMVSIKKEKKKEKEKKKRKAVEF
DDDEEERSETSSELCEPVNLKKKSKKAKVEEEEEEEVKAEDPNAVTRFRISEPLRETLKK
RGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPILESLVNGPAKASRKTGYGR
PPSVLVLLPTRELATQVFDDFKVYGGAMGLNSCCVYGGASYQPQEFALKRGVDVVVGTPG
RIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILGKVKDVNKVQTLLFSATLPD
WVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIPQVIPDIIRCYASGGRT
IIFTEKRESANELSGLLPGARALHGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDIN
DVQLIIQCEPPKDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSNISKIQRESGVKFEHITA
PKAEDIAKAVGVEAAETIIQVSDSVIPAFKSAAEDLLNTSGLSAVELLAKAIAKATGYTE
IKSRSLLSSMENHVTLLLESGKPIYTPSFAFSVLRRILPEDKVESVTGMTLTTDGNGAVF
DVKKEDVDTFLAAQENAAGVNIEVVKTLPSLQEKEQQRGRFGGGGRGRGGFGDRSGGNRF
SGGRGGGFSDRRNSSGGFKGRNNGNKW
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatatctcttactaacaccaccaccgccaccaactctccagattccaagaaa
gaaaagaagatgaagaagaaagtagctcttgaatcccaagaaactgaccctatgatggtt
tcaatcaagaaagagaagaagaaagagaaggagaaaaagaagagaaaagctgtagagttt
gatgatgatgaagaagagaggagtgaaacaagctcagagctttgcgagcctgtgaatttg
aagaagaaaagcaagaaagctaaggttgaggaggaggaggaagaggaagttaaggctgag
gatcctaatgctgtgacgaggtttaggatatctgaaccgttgagggaaactttgaagaag
agagggattgaggctttgtttcctatacaagctaggacttttgaggatatccttaatggc
ggtgatttggttggccgtgctagaactgggcagggtaaaacgctggcttttgttttgcca
attttggagtccttagtaaatggtcctgcaaaagcatcaaggaagacaggctatggcaga
ccacctagtgttttggttcttttacctaccagggaattggccactcaggtgtttgatgac
tttaaagtttatgggggcgcaatgggcttgaattcttgctgtgtatatggaggagcctca
taccagcctcaagaatttgccttgaagagaggggtggatgtagttgtgggaacacctggc
cgcataaaggatcacatagagaaggggaacattgacttaagcttattgaagtttcgggtc
cttgatgaggctgatgaaatgctgaggatgggttttgttgaagatgttgaacttattctt
ggaaaagtaaaggatgtaaacaaagttcaaacacttctattcagtgccaccttgccagac
tgggtgaaacagatctcttctaagtttctcaagccaaccaagaaaactattgatcttgtt
ggcaatgagaaaatgaaagccagtaccaatgtaaggcatattgtacttccctgttctact
tctgccatacctcaggttattcctgatatcatccgttgttatgccagtggaggccgcaca
attattttcacggagaaaagggaatctgcaaatgaactttctggattattgcctggagcc
cgggctttacatggggaaatacagcagtctcagcgtgaggtgaccctttctgggttcagg
tcaggcaagttcctgaccttggtggctacaaacgttgctgcaaggggattggatatcaat
gatgtacagttaatcatccagtgtgaacctccaaaggatgtagaagcttatatacatcgg
tctggacgcactggacgggctggcaatagtggtgttgctgtgatgctctatgatccaaga
aggtcaaatatatctaagatccaaagagaatctggtgtgaaatttgaacatataactgcc
cctaaagctgaggatattgctaaagcagttggtgtggaggctgcagaaacaataattcag
gtttcagacagtgttattccagcattcaaatctgcagcagaggatctgttgaatacctca
ggtttgtcagcggtagaactacttgcaaaagcaattgccaaggctactggatatactgag
atcaagagcaggtcactactctcttccatggagaaccatgtcacgttacttcttgaatcc
ggaaaacccatctacaccccgtcatttgcctttagtgtattgaggagaatcttgcctgag
gataaggttgagtccgtgacgggtatgacccttacaactgatggaaatggtgcggttttt
gatgtaaagaaagaagatgttgatacctttttagctgctcaggaaaacgctgctggtgtt
aacatagaggtggtaaaaactttgccatctctgcaagaaaaagaacaacaaaggggtaga
tttggtggtggtggtcgtggtagaggcggttttggtgataggagtggtggcaataggttc
tcaggaggcagaggtggtggattctcagatcgaagaaacagctctggaggctttaaaggt
cgcaacaatgggaacaaatggtga
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