KEGG   Populus nigra (Lombardy poplar): 133675974
Entry
133675974         CDS       T10372                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03082  ATP-dependent chromatin remodeling
pnz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133675974
   03083 Polycomb repressive complex
    133675974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pnz03036]
    133675974
Enzymes [BR:pnz01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     133675974
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     133675974
   HDAC complexes
    Sin3A-HDAC complex
     133675974
    BRAF-HDAC complex
     133675974
    REST complex
     133675974
    SHIP complex
     133675974
    MiDAC complex
     133675974
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     133675974
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133675974
  Chromatin remodeling factors
   NuRD complex
    133675974
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 133675974
NCBI-ProteinID: XP_061953538
LinkDB
Position
16:complement(10174247..10178507)
AA seq 467 aa
MEDITGGASLPSTGTDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYALHR
RMEINRPFPAGPTDIRKFHSDEYVEFLSSVSPQSVGDPAFGRQLKRFNVGEDCPVFDGLF
GFCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGHIKDTGAGQGKNYALNIP
LNDGMDDENFRGLFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
LRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVEP
SNVENLNSPKDMERIRNILLEQLSRLPNAPSVPFQTTPPTTEVPEEAEEDMDQRPKRRIW
NGEDFESDHDEDEKPGPRFFDADAQPNNKIRDGVDAMEEDKKEHPGL
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggaggacatcaccggaggcgcatctttaccatcaacaggaacagacgcaaaaaaacgc
cgagtcacctacttctacgaacccacaatcggcgactactactacggtcaaggccatcca
atgaaaccccatagaatccgtatggcccacaacttgatagtccactacgctctccaccgt
cggatggaaatcaaccgtccattcccagcaggtcctacagacatacgaaagttccattct
gatgagtacgtggaattcttgtcttcagtgtcgccacaatctgtgggtgatccagcattt
gggaggcagttgaagaggtttaatgttggcgaagattgcccagtttttgatgggttattt
gggttttgccaagcctctgctggtggctctattggtgctgctgttaagcttaatagaggg
gatgctgatattgctttgaattgggctggtggcttacatcatgctaagaagagtgaggct
tctgggttttgttatgttaatgatattgttcttggcattcttgagttgctcaaagttcac
aggcgtgtactgtatgtagatattgatgtccaccacggagatggtgttgaggaggcattc
tacactactgacagggttatgacagtgtccttccataaatatggagatttctttccaggg
actgggcacattaaagacactggtgctgggcaggggaaaaactatgccctgaatattcca
ttaaatgatgggatggatgatgaaaatttccgtggtctgtttcggcctctaatccaaaaa
gtgatggaggtttatcaacctgatgccgttgttctccaatgtggtgcagattcgttgtct
ggtgataggttggggtgtttcaatttgtctgttaagggccatgcagactgtcttcgtttt
cttagatcttacaatgttcctctgatggtcttgggtgggggtggctatactatcaggaat
gttgcccgttgctggtgctatgagacagctgttgcagttggggtggaaccagataataaa
ttgccttacaatgagtactttgagtactttggtcctgattatacacttcatgttgagcca
tccaacgtggagaacctaaactcacccaaagatatggagagaataaggaacatactgcta
gagcaactttctcgactgcccaatgctcccagtgtaccttttcaaacaacaccacccaca
actgaagttccggaagaggctgaagaggacatggatcaaagaccaaagcgtcgaatatgg
aatggtgaggattttgagtctgatcatgatgaagatgagaaacctgggcctagatttttc
gatgctgatgcacagccaaataataagataagggatggtgtggatgcgatggaagaagac
aagaaagagcatccagggttgtga

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