Populus nigra (Lombardy poplar): 133676030
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Entry
133676030 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133676030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133676030
03009 Ribosome biogenesis [BR:
pnz03009
]
133676030
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133676030
Spliceosome [BR:
pnz03041
]
Complex A
U1 snRNP components
U1 related factors
133676030
Complex B
133676030
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133676030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
133676030
NCBI-ProteinID:
XP_061953585
LinkDB
All DBs
Position
16:complement(10241893..10245974)
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AA seq
609 aa
AA seq
DB search
MNPYDNRYSDPDSYRHRHHRSDLMGQKTPLVPTMIGPVPHGGGAGVPPPPSFAGRGGPPP
VGGGYPAFERPSSGFSVGRGGGGGGRGFSGGRGSNFHGGDRRNDAGRGRGWNSGSGRGGG
GGRGGRFGGGDPRRELDNIALPKQDFGDLVPFEKNLYFENPSIRAMSEHEVVTFRARREI
TVEGHEVPRPIRIFHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGS
GKTLAYLLPAFVHVAAQPRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIY
GGAPKGPQIRDLQRGVEIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQI
RKIVSQIRPDRQTLYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMD
LEKYKRLIKLLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVL
AEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTF
FTESNAKFARDLIKILQEAGQIVPPSLSAMTRSAGSFGGNFRSRGRGGFGNRGMISGSNT
VPLGAGRSW
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttacgacaaccgctactccgaccccgactcgtaccgtcaccgtcaccatcgc
agtgacttaatgggccaaaaaactccattggtacccacaatgatagggcctgttcctcat
ggcggtggtgctggggttcctccgcctccgtcttttgcgggtagaggcggtccccctcca
gttggtggaggttatcctgcttttgagcgaccttctagtggattcagtgttggacgaggg
ggtggaggaggaggaagggggtttagtggtggccgagggtctaattttcatggtggggat
agaagaaatgatgctggccgtgggagaggctggaattctggttctggccgtggtggtggt
ggtggaagaggggggaggtttggagggggagatccaaggagagagttggataatattgca
cttccaaagcaggattttggggacctggtgccttttgagaagaacttatacttcgagaat
ccttctattagggctatgtcggaacatgaagtggttacgtttcgtgctagaagagaaatt
actgttgaaggtcatgaggtgcctaggcctattagaatttttcacgaggccaatttccct
gattactgcttacaggtgattgctaagttgggttttgttgagccaacgccaattcaagct
caagggtggccaatggctctaaagggtagagatctaattggcattgctgagactggttct
ggtaagacactggcatatctgctaccagcttttgtgcatgttgctgctcagcctcgattg
gtacatggtgatggtccgattgtgttagtattagctcctacaagagagctggcagttcag
attcaagaagaagctttgaagtttggttcaaaggcgaatattaggagcacatgcatatat
ggcggtgctcccaagggaccccaaattcgtgatcttcaaagaggtgttgagattgttatt
gctacccctggtcgactaatagatatgttgggagctcaacacgtgaatttgcgaagagtc
acatacctagtgttggacgaggctgatcgcatgttggacatgggctttgagcctcaaatt
aggaaaattgtatctcagattcgaccagataggcagacattgtattggagtgcaacatgg
cccagggaggttgaagctttagcaaggcattttttgcataatccatacaaggttatcata
ggatcgcaagatttaaaagcaaaccagtctataaagcaagttgttgaagtcatgatggac
ctggagaagtacaaacggctgatcaaactgctgaaagaagtgatggatggaagtcgaatt
ctaatattcatggagacaaaaaaaggctgtgaccaagttacaaggcagttgagaatggat
ggatgggcagctttgtccatccatggtgataaaaaccaggctgaaagggattgggtcctg
gcggagttcaaaagtggcagaagccctataatgactgccactgatgttgctgcacggggc
cttgatgtgaaggacataaaatgtgtggtcaactatgattttccttccagccttgaggat
tatgttcacaggataggccgaactggtcgagcaggagctaggggaactgccttaaccttt
ttcacagagtcaaatgcaaaatttgctagggatcttattaaaattctgcaagaagcaggg
cagattgtgcccccgtcattatctgctatgactcggtcagctggttcttttggaggtaac
ttccgttccagaggaagaggcggcttcggcaaccgggggatgatttcaggatccaatact
gtgccacttggtgctggtagatcttggtaa
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