Populus nigra (Lombardy poplar): 133676132
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Entry
133676132 CDS
T10372
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133676132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133676132
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
133676132
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133676132
Multi subunit type E3
ERAD complex
133676132
LMBR1L-GP78-UBAC2 complex
133676132
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-RING_11
zf-RING_5
zf-RING_16
zf-C3HC4_3
zf-RING_Vps41
zf-C3HC4_4
U-box_ZFPL1
FAR1_N
zf-HC5HC2H
E3_UbLigase_EDD
FANCL_C
Endonuclease_7
zf_RING_Vps8_fungal
PHD
Motif
Other DBs
NCBI-GeneID:
133676132
NCBI-ProteinID:
XP_061953709
LinkDB
All DBs
Position
1:39672323..39680321
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AA seq
586 aa
AA seq
DB search
MGLSYIAISAVCTALSFVGLQCWTEVSLGRLRSDGLIGESSINSENVNRALELLFSSYAT
IALLVNFVFNVFLLLNLCLKTIFFGELYSSETRKLVERLINYAIYKGTFLPLVIPPTISQ
TGLWSIWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVYSALLLVLSVDFFWIEMC
FVIYRSTGSSMFLLLFFEPFSIAFETMQAMLVHGFQLLEIWFHHSAGNSTNCQRFKFFDA
MRAGSLLEWKGVLIRNLGFSLDMATLLMALGHYVYIWWLHGVAFHLVDAVLFLNIRALLS
AIIKRIKGFIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCSHIFHLV
CLRSWLDQGLNEIYSCPTCRKPLFVDRPENEASTHTGEALTDEQLAHQINEGRERQNSPG
HVLPAGVFPNQIRNSMEGSPWRSAGLDSSWLPTWPSQGGEAGPSTAMRSVGLGRVQMMVR
HLASVGETYAQTALEDAAWSLWPMNPSHAAPSTSFIPPAAGGIHPGGTGGLHMSTTSRTT
NDNIANILAMAETVREVLPHIPDELILQDLQRTNSATVTVNNLLQR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgagttatatagcgatttcagcagtctgtacggctttgagttttgtgggtctt
caatgttggacggaggtgtctttaggtagattgagatcagatggtttgattggtgagagt
tctatcaactcggagaatgtcaaccgtgcgcttgagcttctgttcagttcttatgcaacc
attgcattgttggtgaattttgtattcaatgtatttctactactcaatctttgtctcaag
actattttctttggagagttgtattcttctgaaactcgaaaactagtggaacgtcttatt
aattatgctatttacaagggaacctttctgccactggttattccaccaacaatttctcaa
acaggtctctggtcaatttggttgactgttctatgttctttaaagatgtttcaagcacta
gctagagatcgacttgaacgtttgaatgcatctccttctgcaactccgtggacatatttt
cgtgtttattcagcactgttgctggtcctctctgttgactttttctggatagagatgtgt
ttcgtgatatacagaagtacgggctcgtccatgtttttgttgttgttcttcgagcctttc
agtattgcttttgagaccatgcaagctatgctggttcatggatttcagttgcttgagatt
tggttccatcattcggctgggaatagcacaaattgccaaaggttcaagttttttgatgca
atgagagcaggttcattgttggagtggaaaggcgttcttatccggaacttgggtttttcg
ctagacatggcaaccttattaatggcacttggtcattatgtgtatatatggtggcttcat
ggtgtggcatttcatcttgtggatgcagttctatttttgaatatacgtgcattgctaagc
gctatcataaagcgtataaaaggattcatcaagcttagaatcgctttaggtgcccttcac
gcagcacttcctgatgcaacatcagaagagctacgagcatatgatgatgaatgtgctatc
tgtagggaacctatggctaaggccaaaaggctacattgcagtcacatatttcatcttgtt
tgcttgagatcttggttggatcagggtttaaatgagatatactcatgtcccacttgtcgg
aagccactttttgtagacaggcctgaaaatgaagcaagtactcatactggagaagctcta
acagatgaacaacttgctcatcaaataaatgaaggacgtgaacggcaaaacagtccaggt
catgtgctgcctgctggagtattccctaaccagattcggaactctatggaaggcagccct
tggagaagtgcagggttggattcaagttggctacccacttggcccagccagggtggagag
gctggtccctcaacagctatgagatctgttggattgggtagggttcagatgatggtgagg
catcttgcatctgtgggagaaacttatgcacaaactgcccttgaagatgctgcttggagc
ctttggccaatgaatccatctcacgctgctccatctacctctttcatccctcctgctgct
ggtggaatacaccctggtggcactggtggtttacatatgagcaccacatcacgcaccaca
aatgacaacatagcaaacatacttgccatggctgagacagtgcgggaggttttgccccac
attccagatgagttgatactccaggacttgcagcgaacaaattctgctactgttactgta
aataatctcctgcaaaggtga
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