Populus nigra (Lombardy poplar): 133676199
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Entry
133676199 CDS
T10372
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133676199
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pnz01002
]
133676199
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133676199
03036 Chromosome and associated proteins [BR:
pnz03036
]
133676199
Peptidases and inhibitors [BR:
pnz01002
]
Metallo peptidases
Family M1
133676199
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133676199
Coactivators
SAGA/TFTC/STAGA complex
133676199
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
133676199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
133676199
NCBI-ProteinID:
XP_061953799
LinkDB
All DBs
Position
16:complement(5448139..5477754)
Genome browser
AA seq
1393 aa
AA seq
DB search
MAKPRKPKNEDAKPENSGAVVRHQKLCLSIDIDKHQIYGYTELEIAVPDIGIVGLHAENL
GIESVFVDGEATEYEYYPHQQQNVDGEKRWSSVTSPSSAADAAGAVYLSALERERVPNLL
INCCKAFRVPNEVQEIVNLENGVPFSGEPKQNVKLVRINYWVEKAETGIHFDNEVVHTDN
QIRRARCWFPCMDEGFQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPHKTFVYKLDV
PVTAKWISLVVAPFEILPDPHVALISHMCLPSNLSKLRNTIKIFHNAFNYYEEYLDAKFP
FGSYTQVFLAPEMIVSSTNLGASMGVFSSQVLYDETVIDQAIDTSIKLAFALAKQWFGVY
VTPEEPNDEWLLDGLAGFLTELFIKKFLGNNEARYRRYKANCAVCKVDDSGATALSFSAS
CKELHGTHKIGLYGKIRSWKSVAILQMLEKQMGPEFFRKILQKVISRAQDTIPVRSLSTK
EFRHFATKVGNLERPFVKEFFLRWVCSCGCPVLRMGFSYNKRKNMVELAVLREFTAAPDA
NASFLNLDSENREGDIGWPGMMSIRVYELDGMYDHPVLPLAGEMWQLLEIQCHSKLAARR
FQKPKKSSKPDGFDENGDVPASDMRSSLESLLSWIRADPEMEYLAEIHFNQPIQMWINQL
ERDEDVVAQAQAIAALKTLPQLSFSVTNAMNNFLNDTKAFWRVRIETAFALANTASEEND
WAGLLHLVKFYKSRRFDAAIGLPKPNDFHDFPEYFVLEAIPHAVAKVRAADKKSPREAVE
FILQLLKYNDNTGNPYSDVFWLAALVQSVGGLEFGQQTVLFLSSLLKRIDCLLQFDRLML
SYNGILTISCIRTLTQIALKLSGSIHHDHVFELIKPFRDFKTIWQIRIEASRALLDLEFH
CKGVDAALSLFITYLEEEPSLRGQAKLGAHAMRLCQIQDESDSEDSIKCTTLLALIRLLE
GHIGFNNTILRHHLFCILQILAGRAPTLYGIPRDRTLCIGDSETCSDPRNIFAGLVTETK
PLEPPMEIPKLAQDNFAFPEAIKEADIISNKDQHKMDMAIPEGLNDPDAISNNHGQKMDL
AIQEASEEVAVPEASKETDIPVASKEEDNISNSHERRRPVVKIRVKHSAASSRAEETDIQ
NVERSQGGHHETDRGASSSVSVDAPQRISTEAVSISYQNLDEVNSCLDHGSRMSASIGSA
KLASDGDNFGKELQCTAESSKVSMHPQPDDPSSRRVMQDNLVDTDAQRFASLQTLSVERV
NPDGGSLGIMASSSRGKEKEKKKDKEKKRKREDHKGHRDDPEYLERKLLKKEKKRKEKEM
TKLLSGGAKATSVELPGKNEKPTIKLATVPLKPNQPSESKAVATNIETKPEPSEGTSSVP
KFRIKIKNRTLNS
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcctcgtaagccgaaaaacgaagacgccaagcctgagaactccggtgccgtg
gttcgtcaccagaaactctgcctctctatcgacatcgacaagcaccaaatctacggttac
actgagttggaaattgcggtgccggatataggaattgtagggttacatgcggagaattta
ggaatagagagtgtatttgttgatggtgaagctactgagtatgaatattatccacatcag
caacaaaatgtggatggtgaaaagagatggagctcagttacgagccctagctcggctgct
gacgctgctggcgctgtgtatttatcggctctggagagagaacgtgttccgaatttgcta
attaattgttgcaaagcttttagggttccaaatgaagtgcaagagattgtgaatttggag
aatggagtgccattttctggtgaacctaagcagaatgtaaaattggtgcgcattaattat
tgggtagagaaagcagagacgggcattcattttgacaatgaagtggtacatactgataac
caaataaggcgtgcacgttgctggttcccttgtatggatgaaggatttcagcgttgctgt
tatgatctggagtttacagttgcccataatcttgttgctgttagtactggaagcttatta
tatcaggttctaagcaaggatgatcctcctcacaaaacatttgtctacaaattagatgtt
cctgtgactgctaaatggatatctttggtggttgcaccatttgaaatacttcctgatccg
catgttgctctcatatcacacatgtgcttgccatctaatttgtcaaagctccggaatacc
atcaaaatttttcataatgcgttcaactattatgaagaataccttgatgcaaaatttcca
tttggttcatacacacaagtttttttagctcctgagatgattgtatcctcaacaaatctg
ggagcttcaatgggtgtctttagctctcaagttttatatgatgagacggttattgatcag
gccatagacactagcattaaactagcttttgcactcgcaaaacaatggtttggggtatat
gtcactcccgaggaacctaatgatgaatggcttctggatgggcttgctggctttttgaca
gagttatttataaagaagtttttaggaaataatgaagctcgctatcgtagatacaaggct
aattgtgctgtttgcaaggtagatgatagtggcgcgacagctttgagcttctctgcttct
tgcaaggaattgcatggaacccataaaattggtctttatgggaaaataagatcttggaag
tctgtggcaatattgcaaatgctggaaaagcaaatgggtccagagtttttccgcaagatt
ttgcaaaaggttatttcccgggctcaagatacaatccctgtcagatctctcagtacaaag
gagttccgccacttcgctactaaggttggaaatcttgagcgcccatttgtgaaagaattt
ttcctgcgatgggtctgctcttgtggatgtccagtgctaaggatggggttctcttataac
aaaaggaaaaatatggttgaattggcggtgcttcgagagtttacagctgcacctgatgca
aatgcatctttccttaaccttgattctgaaaaccgggagggtgatattggatggccaggg
atgatgagtatcagagtttatgaacttgatggcatgtatgaccatccggttctacctttg
gctggagaaatgtggcagctattggaaatacagtgccattcaaagcttgcagccagacgt
ttccaaaagcctaaaaagagttcaaaacctgatggctttgatgaaaatggtgatgtacct
gcttcagatatgcgctccagtttggaatccctgttgtcatggattagggcagacccagaa
atggaatatcttgctgaaattcattttaatcagcctatacagatgtggatcaatcaatta
gagagggatgaagatgttgttgcacaggcacaagcaattgcagcattaaaaactttacca
caactttccttttctgttacaaatgctatgaataatttcctcaacgacaccaaggccttt
tggagagttcgaattgagactgcatttgcattggctaatactgcttctgaggaaaatgat
tgggctggcttactccatttggtgaaattttacaaaagtcgaaggtttgatgcagctatt
ggactccccaagccaaatgactttcatgattttcccgagtactttgttcttgaggcaatt
cctcatgctgttgctaaggtcagggctgcagataagaaaagcccaagagaagctgttgaa
tttattttgcaacttctgaagtataacgataacactggaaatccttactctgatgtgttc
tggttagctgcactggtccagtcagttggtggacttgaatttgggcaacagactgttctc
tttctgtcctcccttctcaagcgaattgactgtcttttgcaatttgacaggctgatgctg
agttataatgggatcttgacaatcagctgtattcgaacattgacacaaattgcattaaaa
ctctcaggatccattcatcatgatcatgtctttgaacttattaaaccttttcgggatttc
aagacaatatggcaaattcgaattgaagccagtagagcactccttgatctggaattccac
tgcaaaggcgtggatgcagcattgtcattatttatcacatatttggaggaagaaccgtca
ttaagagggcaagcaaaacttggtgcacatgccatgcggttatgtcagatacaagatgaa
tccgattctgaagattctatcaagtgtacaactctattggctttgattcgtctacttgaa
ggtcatatcggattcaacaataccattcttcggcatcacttgttctgcattttacaaatc
cttgcaggaagggccccaacactttatggaattcccagggatagaacattatgtattggc
gactcagaaacttgcagtgatccaaggaatatttttgcaggtcttgtgacagaaacaaag
cccctggaacctcctatggagattccaaaacttgcacaagataattttgcctttccagag
gctataaaggaagcggatataatttccaacaaagatcaacataagatggatatggccatt
ccagaaggtctcaatgatccagatgcgatttccaacaatcatggacagaaaatggatctg
gccattcaagaagcttcagaagaagtagctgtgcctgaagcttcaaaggaaacagacatc
ccagtagcttcaaaggaagaagataacatctccaacagccatgagcgcagacggccagtt
gttaagatcagagtcaaacattctgctgcttccagtagagctgaggagactgatattcaa
aatgttgagagatcccaaggtgggcaccatgaaactgatcgtggggccagcagctctgtt
tctgtggatgcaccccagaggatttcaactgaagctgtgagtattagctaccaaaatctc
gacgaagtcaactcgtgtcttgaccatggttctcggatgagtgctagcattggcagtgca
aaattagcaagtgatggtgacaattttggaaaggaactccagtgcactgctgaatcaagt
aaagtttctatgcaccctcagcctgatgatccatcatcacgtagagtcatgcaagataac
cttgtagacactgatgcacaaaggtttgctagtctacaaaccctctcagttgaaagagtt
aatcctgatggtggttcattgggtatcatggcatcttcttctcgagggaaagaaaaggag
aagaagaaggataaggaaaagaagcggaagcgggaagatcacaaggggcaccgtgatgat
cctgaatatttggagaggaaactgttgaagaaagagaagaaaaggaaagaaaaggagatg
acaaagttgctgagtggtggggcaaaggctacatcagtggagctgccaggtaagaatgag
aagcctactattaagttggcaacagtgccattgaaaccaaatcaacccagtgaatccaaa
gcagtggccacgaacattgaaacgaagcctgagccatcagaaggtacttcttctgttccc
aaatttcgaattaaaattaagaataggacacttaacagttag
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