Populus nigra (Lombardy poplar): 133676222
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Entry
133676222 CDS
T10372
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133676222
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
133676222
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
133676222
NCBI-ProteinID:
XP_061953830
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Position
16:complement(10628395..10630452)
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AA seq
424 aa
AA seq
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MSLTPFPLFSQFLSSRRRQQTMANPSLCLLFLFSLLTPALISSSPVQDPELVVQEVHRAI
NASRRKLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDS
GNDDPVNPKPGTLRHAVIQDEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGP
CITIQYVTNIIIHGLHIHDCKQGGNAMVRDSPQHFGWRTVSDGDGVSIFGGTHVWVDHNS
LSNCNDGLVDAIHGSSAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLV
QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIRFSKEVTKHEDAPE
SEWKHWNWRSEGDLLMNGAFFTASGAGASSSYARASSLGARPSSLVGTITVGAGALGCRK
GARC
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcacacccttccctctcttctcacagtttctctcctctcgaagaagacaacaa
acaatggcaaacccttctctctgtctcctcttcctcttctctctcctaaccccagctctc
atttcctcttccccagttcaggacccggaacttgtagtacaagaagtgcatagggccatc
aatgcttctaggaggaagttgggctatctctcttgcgggactggcaaccccattgatgac
tgctggaggtgtgatcccaattgggagaagaaccgtcagaggctagcggattgtgcaatt
gggtttggtaagaatgccattggtggaagagatggtaagatttatgtggtcacagactct
ggtaatgatgatcccgtgaaccccaagccagggactctcaggcatgctgtgatccaggat
gagccattgtggatcattttcgctcgagacatgacaattcaactgaaggaagagttgatc
atgaactcgttcaagacgattgatggtagaggtgctagtgtccatattgctggcggcccg
tgcatcaccatacagtatgtgaccaacattattatacatggactacacatacacgattgc
aagcaaggagggaatgctatggtgagagactccccacagcattttggctggaggactgta
tccgatggtgacggtgtgtccatcttcggcggtactcacgtatgggtggaccataattcg
ttgtcaaattgtaacgatggacttgtcgatgccattcatgggtcctccgccatcaccatt
tcgaacaattacatgacccaccatgataaagtcatgcttctggggcacagcgattcctac
actcaagacaagaacatgcaagtcaccatagcctttaatcactttggagaagggcttgtc
cagagaatgccaagatgcagacacgggtatttccatgtggtcaacaatgactacacccat
tgggaaatgtacgccattggagggagtgctaacccgaccatcaacagccaaggcaataga
tttgttgcgcccgacatcaggttcagtaaggaggtaacaaaacacgaagacgcaccagag
agtgaatggaagcactggaattggaggtccgaaggagacctactaatgaatggtgcgttt
ttcacagcatctggtgcaggtgcttcttcaagttatgccagggcatcaagcttgggtgca
agaccatcttcgcttgtcggtacaataacagtgggagcgggtgcacttggttgcaggaaa
ggggctcgttgctag
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