Populus nigra (Lombardy poplar): 133676297
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Entry
133676297 CDS
T10372
Name
(RefSeq) autophagy-related protein 13a-like
KO
K08331
autophagy-related protein 13
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
133676297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133676297
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133676297
Membrane trafficking [BR:
pnz04131
]
Autophagy
Autophagosome formation proteins
ULK complex
133676297
Atg1 complex
133676297
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
133676297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
133676297
NCBI-ProteinID:
XP_061953937
LinkDB
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Position
16:complement(35841..40074)
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AA seq
605 aa
AA seq
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MHGHSHQDSGKQEQIISHFLLKSLHIILDSRIPSLHPHNHPRDFCSTSHVKKSDKWFNLV
LGDRRAALDNLSFWHRNLMDPMVIDVILVHQPSPLSSSMHNLYVDPGTSVETVLERWVVH
YESLRVMPPQTAESSASYKKTYKKSIILLRSLYSHMRLLPAYRIFRQLSSSKQTYNFDII
YKVSSFCEPFSSADGEVMKELSFVPVEALPGSLCVTVTYRSTLSDFKLEPVTTMPPKIIM
DYVGSPTTDPLRSFPSSEKGAGATSFPLRGMQPPVSSPFQRPHSWTSCYHRVAHMMNQPL
GGSSPPCRTSRMTCDFPSSPTDIYGHRAQNYRPPTPQKTSCYDEYQISPPFSPSMSPSTP
THLYNGSPVLARVTSETAPVTIPLPISSRSSRYLSPNFSDSSRHSLPPLSPRSTKHDSSS
QESPSGIRSFKKAEAIRFAELNSGNVNHYSGQKLLKDSKDDSGRFSGLLSSSGSPRIGFS
RSSSRLSFQDDLEDDDFSCPFDVDDVDTSDSHASSHTAAVGKKSQDAAVGILVQMLRTAP
PLRQDPSCYSSQSMRTDVEEGIGTASGFFMPRKTGDALEELRSYREMKDLLLSKSGTRAV
SKEEA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcatggccattctcaccaagattctggaaaacaagaacaaatcatttcccattttcta
ttgaagagcttgcacatcattttggactccaggattccctctcttcatccccataatcac
cctcgggacttttgttccacttctcatgttaaaaagagtgacaaatggttcaatttagtt
cttggagaccgccgtgctgctctggataacttgagtttttggcacagaaatctcatggat
cccatggttattgatgtaatacttgttcaccaaccgtctcctctatcttcatccatgcac
aatttgtatgttgaccccgggacatctgtcgagacagttttagagaggtgggttgttcac
tatgagtccctgcgggttatgcctccccaaaccgctgaaagttctgcctcttacaagaag
acatataagaagtcaatcatactcttacgctccctttactcccacatgaggcttctccca
gcataccggatctttcgtcagctaagctcatccaagcaaacttacaattttgatatcatt
tacaaagtttcttcattttgcgaacccttttccagtgcagatggggaagtaatgaaggag
ctcagttttgtccctgttgaggccctgcctggcagcctttgtgtaactgtgacctatcgt
tcaacactatctgatttcaagcttgagcctgtcacaactatgccaccaaagattataatg
gactatgttggtagccctaccactgatcctcttaggtctttcccctcttcagagaaggga
gctggtgctacatcctttcccctgagaggaatgcaaccacctgtttcttctccttttcaa
cgccctcatagctggacaagctgttaccacagagtagctcatatgatgaaccaaccactt
ggtggatcttcaccaccttgtcgcacatctcgcatgacgtgtgattttccatcttctcct
actgatatttatggtcatagagcccaaaactatcgaccaccaactcctcaaaagactagt
tgttatgatgagtaccagatttctcctccattctcaccatcaatgtccccttctacccca
acacacctctacaatggtagtcctgtgctagctcgcgttacttcagaaactgcacccgta
actattccacttcctatatcaagcagaagttctagatacctttctcctaacttttctgat
tcaagtaggcattctcttccacctttatctcccagaagcacaaagcacgattcatcatca
caggagtctccttctgggattcgatcatttaagaaagcagaagctataaggtttgccgag
ttaaactctggcaatgtaaatcattattctggtcagaagctgctcaaagatagcaaagat
gattcagggcgcttctcaggattgttatcttctagtggttctccacgcattggtttttct
agaagttcaagtagattatctttccaagatgatttagaggatgacgatttctcatgccct
tttgacgttgatgatgttgacacatcagattcccatgccagttcccacactgcagcagta
gggaaaaaatctcaagatgctgctgttggtatccttgttcagatgctgcggacagcgcct
cccctgcgacaagatccaagctgttactcatcccaatccatgaggactgatgtagaggaa
gggataggcacagcttctgggttttttatgccaagaaagacaggagatgcgctagaagag
ctgaggagttacagagaaatgaaagacctactactctctaagagtggaactcgggcggtc
agcaaagaagaagcttaa
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