Populus nigra (Lombardy poplar): 133676299
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Entry
133676299 CDS
T10372
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133676299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133676299
03036 Chromosome and associated proteins [BR:
pnz03036
]
133676299
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133676299
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133676299
PBAF complex
133676299
GBAF(ncBAF) complex
133676299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
133676299
NCBI-ProteinID:
XP_061953940
LinkDB
All DBs
Position
16:complement(11494487..11498308)
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AA seq
574 aa
AA seq
DB search
MSKIMEPTTHSDPNLNPIRPNEPELDLYTIPSYSSWFSWHDIHETERVALREFFDGSSIT
RTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLVGDVSLLNKVFLFLNNWGLINFSCEK
NEEIGLGSGNVDVRVEDGAPNGVRIVEMPDKLKPISVGSVQSSAEGSGGGGSGSGLKLPP
LASYSDVFGELVGKKKEVVCGNCGGSCDSGQYEYSKGDYLICQKCFNDGTYGENKSKEDF
KLKDSAENNGSNAAVWTEEETLRLLESVSRHGNDWDLVAQNVKTKTKLDCISKLIELPFG
DLILSSTYGKGNSSGQIGSTNNSKQVPAAPSEHQDDTKHEDQLHEQMNANEEKGDVMDDG
PLLKRRRITSVSDAGGSLMKQVALISTMVGPDITAAAAEAAVAALCDETACPREIFDGEE
DFPSNGFSSPSFHSKSKRVDEVDASEVKQTPTQSGTEEASAWQNDIPLSLRLRAAVATTL
GAAAAHAKLLADHEDREVENLMATIVETQLKKLHHKIKHFDDLELIMEKEYAEVDELTES
VTEERIDVLRRAIRAGISKSRDHAPIKFHMSNVV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaattatggagccaacaacacactccgacccgaatctaaacccgatccgacca
aacgaaccagagctcgacctctacaccatccccagctattcaagttggttttcatggcac
gatattcacgagacagagagagtcgctttaagagaattcttcgatgggagctcaataacg
agaactccaaaaatctacaaagaatacagagactttataatcaacaagtaccgtgaagat
ccttctagaaggttaacattcacggagattcgaaagtcactggttggtgacgttagtttg
ttgaataaagtttttctgtttttgaataattggggattgattaattttagttgtgaaaag
aatgaggaaattggtttgggttcgggtaatgttgatgttcgggttgaagatggggctccg
aacggagttcggattgtggagatgcctgataagttgaaaccaatttcggtggggtcggtg
caaagtagcgcagagggtagtggtggtggtgggagtgggagtgggttgaagttgccgcct
ttggcgtcctattcggatgtttttggcgagttagtcgggaagaagaaagaggttgtttgt
ggaaattgtggtggaagttgtgattccggccaatacgagtatagtaagggtgattactta
atctgtcaaaaatgctttaatgatggaacttatggcgagaacaagtctaaggaagatttc
aagcttaaggatagtgctgaaaacaatggtagcaatgcagctgtgtggactgaggaggag
actttgcgtcttttagaatctgtttcgaggcatgggaatgactgggacctggttgctcaa
aatgttaaaaccaagactaaacttgattgtatttctaagctcattgagctgccatttggg
gatcttatattgagttctacatatggaaagggcaattctagtggacagattgggagcaca
aacaactcaaaacaagttcctgcagctccatctgagcatcaagatgataccaaacatgaa
gatcaattgcatgagcagatgaatgcaaatgaggagaagggagatgtcatggatgatggc
ccccttttgaaaagaagacgcatcacttctgtttcagatgctggtggctctctgatgaaa
caggtagctctcatctcaaccatggttggcccagatatcacagctgctgcagctgaggct
gctgttgcagcactttgtgatgaaactgcatgtccaagagagatatttgatggtgaggag
gattttccatctaatgggttttcttctccctccttccattcgaagtctaagagagttgac
gaggttgatgcctcagaggtgaagcaaacacccactcagtcaggaaccgaggaggcatct
gcatggcagaatgacatacctctatctttgcgtcttagagctgctgttgcaacaactctt
ggggcagctgctgctcatgctaaattactggcggatcatgaagaccgagaagttgagaat
ttaatggcaaccatagttgagacacagttgaagaaactgcaccacaaaatcaagcacttt
gatgatctggagctgataatggagaaggaatacgctgaagtagatgaactaacagagtcc
gtgaccgaggagcggattgatgtcttgcgaagggcaattcgtgcaggcatatctaaatca
agggatcatgctcccattaaatttcacatgtcaaatgtagtttga
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