Populus nigra (Lombardy poplar): 133676356
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Entry
133676356 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133676356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133676356
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133676356
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
133676356
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
FAIM1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
133676356
NCBI-ProteinID:
XP_061954012
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All DBs
Position
16:813213..816387
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AA seq
332 aa
AA seq
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MEFDNIECVSSSDGLDEDEIHHHNLQHHLHQFASSKPHNVNNNHNNGNTIVVGGPPAIAP
ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVQNRCPTCRQELGDIRCLALEKV
AESLEFPCKFYNLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSVVGDIPFLVAHLRD
DHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFL
RFMGDETEARNYTYSLEVGGHGRKLTWEGTPQSVRDSHRKVRDSHDGLIIQRNMALFFSG
GDRKELKLRVTGRIWKEQQNPETGVCIPNLCS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgataacattgaatgcgtgtcatcatcagatggacttgatgaggatgagatc
catcaccataatttacaacaccacctacatcaatttgcatcatcaaagcctcacaatgta
aacaacaaccacaacaacggtaataccattgttgttgggggtcctcctgcgattgctcct
gcaactagtgttcatgagctgctagaatgtcctgtttgtaccaattctatgtacccacca
atccatcagtgtcacaatgggcacacgctatgttccacctgtaaaacaagggtacaaaat
cgctgccctacttgcaggcaggagctcggagacattaggtgtttagccctagagaaggtg
gctgagtcactggaatttccttgcaaattttacaacttggggtgcccggagatatttcca
tattacagcaagctcaagcacgaggcaatttgcaacttcagaccatataattgcccctat
gctggatcagaatgctctgttgttggagatattcctttcctggttgcgcatctaagggat
gatcacaaggtggacatgcatacaggatgcactttcaaccatcgctatgtgaagtctaat
ccccgcgaagtggagaatgccacttggatgttgacggtcttccattgttttggtcagtac
ttctgccttcactttgaagctttccagcttggcatggcccctgtttatatggcattcctc
cgtttcatgggtgatgagactgaggctcggaattatacctacagccttgaggtcggggga
catggcaggaaactgacatgggagggcaccccacaaagtgttcgagatagccaccggaaa
gtcagggatagtcatgatggtctcattattcaacgaaacatggcacttttcttctctggt
ggggataggaaggagctgaagctaagagttaccgggaggatatggaaggaacaacaaaat
ccagaaactggagtgtgtatacccaacctttgtagctaa
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