Populus nigra (Lombardy poplar): 133676448
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Entry
133676448 CDS
T10372
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133676448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133676448
03009 Ribosome biogenesis [BR:
pnz03009
]
133676448
04131 Membrane trafficking [BR:
pnz04131
]
133676448
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133676448
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
133676448
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
133676448
Membrane trafficking [BR:
pnz04131
]
SNARE
SNARE associated proteins
Others
133676448
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133676448
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133676448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
AAA_17
AAA_18
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NACHT
AAA_lid_PRS2_C
NB-ARC
TsaE
Vps4_C
AAA_24
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
133676448
NCBI-ProteinID:
XP_061954074
LinkDB
All DBs
Position
17:6753492..6758440
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AA seq
802 aa
AA seq
DB search
MSNQAESSDSKGTKRDFSTAILERKKALNRLVVDEAINDDNSVVSLHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGISNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQI
FKSCLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRQKEN
PEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAE
ASAGSDPFAASAGGADEDDLYS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgaatcctctgactctaaaggaacaaagagggattttagtaccgcg
attttggagagaaagaaggctttgaatcggcttgttgttgatgaggctattaatgatgat
aactctgtcgtttcccttcatcctgagactatggagaagctccagctctttcggggtgac
accatcttaatcaagggaaagaaaaggaaagatactatttgcattgcccttgctgatgac
tcatgcgatgaaccaaagatcaggatgaacaaggttgtgaggtcaaacctgagggttagg
cttggagacgtggtatctgtacaccagtgtcctgatgtcaagtatggaaaacgcgtgcat
atcttgcccattgatgacacaattgaaggggtcactggaaatctctttgatgcatacttg
aagccttatttcttggaagcatatcgcccagtgaggaagggtgacctcttccttgtacga
gggggaatgagaagtgtggaattcaaagttattgaaactgaccctccggagtactgtgtg
gttgctccagacactgagatcttctgtgagggagagcccgtgagaagagaggatgaggat
agattggatgaagttggttatgatgatgttggtggtgttagaaaacaaatggctcagatt
cgggagttagtggagcttcctttgagacacccacaactattcaaatcaattggtgttaaa
ccaccaaaaggaattctgctgtatggacctcctggttctgggaagactctaattgcccga
gctgttgcaaatgaaactggtgcttttttcttctgtattaatggacctgaaattatgtca
aagttggctggagagagtgaaagtaatctcagaaaagcatttgaggaagcagagaaaaat
gcaccttcaattatatttattgacgaaatagattcaattgcccccaagcgagagaaaaca
aatggagaggttgagaggagaattgtttcccaacttttgacactcatggatggactaaaa
tcccgtgcacatgttattgtcatgggggctacaaatcggcctaatagcattgaccctgct
ctgaggaggtttgggagatttgatagggaaattgatattggtgttccagatgaagttggg
cgccttgaggttcttcgtattcatactaagaacatgaagcttgctgaggatgttgatttg
gaaagaatagccaaggatacccatggttatgttggtgctgacttagcagctctttgcacc
gaggctgcgcttcaatgcatcagagaaaagatggacgtgattgacttggaagatgagaca
atagatgctgaaatactcaactcaatggcagtgactgacgaacacttcaagactgctctt
ggaataagcaacccatctgcattgcgtgaaacagttgttgaagttcctaatgttagttgg
gaagatattggtggtcttgaaaatgttaagagggagctccaggagactgttcaatatcca
gtggagcaccctgagaaatttgagaagtttggaatgtcaccatcaaagggagttctgttc
tatggccctccaggatgtgggaaaacccttctggctaaagctattgccaatgaatgccag
gcaaacttcattagtgtcaagggtcctgaattgcttacaatgtggtttggtgagagtgag
gccaacgtacgagaaatttttgacaaagctcgccaatctgctccttgtgtcttgttcttt
gatgaacttgactcaattgcaactcagagaggaagcagtgtaggagatgctgggggtgct
gctgatagagttttgaaccagctgctgacggagatggatggcatgactgcaaagaaaact
gttttcataattggggccacaaacagacccgacatcatagaccctgccctattgcgtcct
gggcgtcttgatcagttgatctatatccctcttcctgatgaggagtcacgctttcaaata
ttcaaatcttgcttgaggaaatcaccagtctccaaagatgttgacctcagagcacttgcc
aagtacacacagggtttcagtggtgctgatattacagaaatatgccagcgtgcttgcaaa
tatgccataagagagaacattgagaaagatattgagaaggagaggaggcaaaaagagaac
cctgaggctatggaggaagatgttgaggatgaggtggcagagatcaaggcagcacatttt
gaggaatccatgaaatatgcccgtcggagtgttagtgatgctgacatccggaagtatcag
gcatttgctcaaacactgcaacagtcaagagggtttggaactgaattcaggtttgctgaa
gctagtgctgggtccgatccgtttgcagcttctgctggcggagctgatgaagatgacctt
tacagttaa
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