KEGG   Populus nigra (Lombardy poplar): 133676448
Entry
133676448         CDS       T10372                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    133676448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133676448
   03009 Ribosome biogenesis [BR:pnz03009]
    133676448
   04131 Membrane trafficking [BR:pnz04131]
    133676448
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pnz04147]
    133676448
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     133676448
Ribosome biogenesis [BR:pnz03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    133676448
Membrane trafficking [BR:pnz04131]
 SNARE
  SNARE associated proteins
   Others
    133676448
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    133676448
Exosome [BR:pnz04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   133676448
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_5 AAA_33 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase nSTAND3 AAA_28 Mg_chelatase AAA_17 AAA_18 ATPase_2 Parvo_NS1 IstB_IS21 ABC_tran Viral_helicase1 AAA_7 NACHT AAA_lid_PRS2_C NB-ARC TsaE Vps4_C AAA_24 DUF815 Zeta_toxin Zot
Other DBs
NCBI-GeneID: 133676448
NCBI-ProteinID: XP_061954074
LinkDB
Position
17:6753492..6758440
AA seq 802 aa
MSNQAESSDSKGTKRDFSTAILERKKALNRLVVDEAINDDNSVVSLHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGISNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQI
FKSCLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRQKEN
PEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAE
ASAGSDPFAASAGGADEDDLYS
NT seq 2409 nt   +upstreamnt  +downstreamnt
atgtctaaccaagctgaatcctctgactctaaaggaacaaagagggattttagtaccgcg
attttggagagaaagaaggctttgaatcggcttgttgttgatgaggctattaatgatgat
aactctgtcgtttcccttcatcctgagactatggagaagctccagctctttcggggtgac
accatcttaatcaagggaaagaaaaggaaagatactatttgcattgcccttgctgatgac
tcatgcgatgaaccaaagatcaggatgaacaaggttgtgaggtcaaacctgagggttagg
cttggagacgtggtatctgtacaccagtgtcctgatgtcaagtatggaaaacgcgtgcat
atcttgcccattgatgacacaattgaaggggtcactggaaatctctttgatgcatacttg
aagccttatttcttggaagcatatcgcccagtgaggaagggtgacctcttccttgtacga
gggggaatgagaagtgtggaattcaaagttattgaaactgaccctccggagtactgtgtg
gttgctccagacactgagatcttctgtgagggagagcccgtgagaagagaggatgaggat
agattggatgaagttggttatgatgatgttggtggtgttagaaaacaaatggctcagatt
cgggagttagtggagcttcctttgagacacccacaactattcaaatcaattggtgttaaa
ccaccaaaaggaattctgctgtatggacctcctggttctgggaagactctaattgcccga
gctgttgcaaatgaaactggtgcttttttcttctgtattaatggacctgaaattatgtca
aagttggctggagagagtgaaagtaatctcagaaaagcatttgaggaagcagagaaaaat
gcaccttcaattatatttattgacgaaatagattcaattgcccccaagcgagagaaaaca
aatggagaggttgagaggagaattgtttcccaacttttgacactcatggatggactaaaa
tcccgtgcacatgttattgtcatgggggctacaaatcggcctaatagcattgaccctgct
ctgaggaggtttgggagatttgatagggaaattgatattggtgttccagatgaagttggg
cgccttgaggttcttcgtattcatactaagaacatgaagcttgctgaggatgttgatttg
gaaagaatagccaaggatacccatggttatgttggtgctgacttagcagctctttgcacc
gaggctgcgcttcaatgcatcagagaaaagatggacgtgattgacttggaagatgagaca
atagatgctgaaatactcaactcaatggcagtgactgacgaacacttcaagactgctctt
ggaataagcaacccatctgcattgcgtgaaacagttgttgaagttcctaatgttagttgg
gaagatattggtggtcttgaaaatgttaagagggagctccaggagactgttcaatatcca
gtggagcaccctgagaaatttgagaagtttggaatgtcaccatcaaagggagttctgttc
tatggccctccaggatgtgggaaaacccttctggctaaagctattgccaatgaatgccag
gcaaacttcattagtgtcaagggtcctgaattgcttacaatgtggtttggtgagagtgag
gccaacgtacgagaaatttttgacaaagctcgccaatctgctccttgtgtcttgttcttt
gatgaacttgactcaattgcaactcagagaggaagcagtgtaggagatgctgggggtgct
gctgatagagttttgaaccagctgctgacggagatggatggcatgactgcaaagaaaact
gttttcataattggggccacaaacagacccgacatcatagaccctgccctattgcgtcct
gggcgtcttgatcagttgatctatatccctcttcctgatgaggagtcacgctttcaaata
ttcaaatcttgcttgaggaaatcaccagtctccaaagatgttgacctcagagcacttgcc
aagtacacacagggtttcagtggtgctgatattacagaaatatgccagcgtgcttgcaaa
tatgccataagagagaacattgagaaagatattgagaaggagaggaggcaaaaagagaac
cctgaggctatggaggaagatgttgaggatgaggtggcagagatcaaggcagcacatttt
gaggaatccatgaaatatgcccgtcggagtgttagtgatgctgacatccggaagtatcag
gcatttgctcaaacactgcaacagtcaagagggtttggaactgaattcaggtttgctgaa
gctagtgctgggtccgatccgtttgcagcttctgctggcggagctgatgaagatgacctt
tacagttaa

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