KEGG   Populus nigra (Lombardy poplar): 133676622
Entry
133676622         CDS       T10372                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03013  Nucleocytoplasmic transport
pnz03015  mRNA surveillance pathway
pnz03040  Spliceosome
Brite
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     133676622
    TREX complex
     133676622
Spliceosome [BR:pnz03041]
 Complex C
  Other components
   EJC/TREX
    133676622
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133676622
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz RRM_3
Other DBs
NCBI-GeneID: 133676622
NCBI-ProteinID: XP_061954316
LinkDB
Position
17:5954586..5956400
AA seq 245 aa
MTTTALDMSLDDIIENNRKSSNSRGRPRSSGGPGPSRRFSNRAGNITTPYSKPQVQAPET
SWQHDMFTDNPVSASAYPARASSIETGTKLYISNLDFGVSTEDIKELFSEIGDLKRYSVH
YDRSGRSEGTAEIVFARRGDAVSAVKRYNNVQLDGKPMKIEIVGTNIATRPAVPPSTNGM
YRNQNIAAPRSSSQGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSE
AMPEN
NT seq 738 nt   +upstreamnt  +downstreamnt
atgacgacaacggccctggacatgtctctagacgacataatagaaaacaacaggaagtcg
tcgaattctcgaggcagacctcgttcttctggcggccctggtccttcccgtcggttctcc
aatcgcgcgggaaacataacaacgccctattccaagccccaggtccaagctccagagacg
tcatggcagcacgacatgttcacggataatcctgtttctgcttctgcatatcctgctcgt
gcttcttccattgagactgggactaaactctatatttccaacttagatttcggtgtttct
actgaagacatcaaggagcttttctcggagattggtgaccttaaacgatattcagtccat
tatgataggagtggaagatcagagggaacggcggagatagtctttgcacggcggggagat
gctgtctctgctgtcaagagatacaataatgttcaactggatggaaagccaatgaagatt
gagattgtgggaacaaatattgccactcggcctgctgtccctccatccactaatggcatg
tataggaatcaaaatattgctgctcctagaagtagtagccaaggaaggggtggtaccacg
ggacggcctcgtggtggtgggcatggagttagaaggggtggtcgtggaagaggtagaggt
cgtggtgaaaagatatctgcagaagatctagatgctgatttagaaaagtaccattcagaa
gctatgccagaaaactga

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