KEGG   Populus nigra (Lombardy poplar): 133676975
Entry
133676975         CDS       T10372                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
pnz  Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pnz04121]
    133676975
   03400 DNA repair and recombination proteins [BR:pnz03400]
    133676975
Enzymes [BR:pnz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133676975
Ubiquitin system [BR:pnz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133676975
DNA repair and recombination proteins [BR:pnz03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    133676975
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-C3HC4_3 DEAD zf-RING_2 zf-RING_5 zf-C3HC4_2 zf-C3HC4 Prok-RING_4 zf-rbx1 zf-RING_UBOX zf-ANAPC11
Other DBs
NCBI-GeneID: 133676975
NCBI-ProteinID: XP_061954785
LinkDB
Position
17:12259283..12262365
AA seq 852 aa
MEAELKEEQEDALGLYMNLYARPDSSSFEDWKYSSSQQIRYKTSHVCSFITHIVGLRNHP
AIVFSDHELVTLVRYQQCPRDKYAIKVFNTTSMEVGYLHDQASAALSPLIDAQMINLEGE
VTDSRTGDVKYSVPCLVRVFSKSTDLENVTQSIFGNTLSFTGEPRTNPETNEGKGDKEKG
RIEKLGTLEPPKEVIKAKLLDHQKVGLWWLVNKENSDELPPFWEMKDGLYVNVLTRNRTN
RKPEPLHGGIFADDYGTGKTLTLLSLIAFDKVGNVPEGTGEEDEGVSVCSCKKRGRVSEK
GTGEPNTHTLLDSNIKESSGGMADKSSSASVAKQTLIVCPSSVCSTWKNQLLEHTEKGSL
KLHKYYGDSKIKDVEELKRYDIVLTTYGAFANESFERWCPLLKIEWWRVILDEADVIKNA
NAMQSKAVAGLTARRRWAVTGAPIQNGSFDLFALIAFLRLDPLSKKSYWQSLLERPLAKK
DGNGFSRLQDLMAAISLRRTKDRVLVGRLRSKTVETVRFKIYGDERELYDQMEAESKKVV
RKLIATGRLNRISASIRGAVIRLRQMCNDATPFSLYLKSLLPSDDIGDASEHPELLRKLI
DVLREDEDFDCAICYCPPTDAVITICKHVFCKRCIGTCLQRTRTSCPICRGRISMSDLFS
APPESSDPEDPRKSTAIIPSKVSTLIKLLKESRDVRPTSKSVVFTIFQKMLVILEGPLKD
AGFNVLRLDALADARRRGGIIKKFRSAGQNTVLLANVKVSGAGINLTAASEVYLLEPWWN
SELEEQAIDRVHQYGQEKNVIIVRLIVQDSIEERILMMQERKKQAIEAFGMRGPKERREV
SLEDLCSLLSLE
NT seq 2559 nt   +upstreamnt  +downstreamnt
atggaagcagaattaaaggaagaacaagaagacgcactgggcctatacatgaatctttat
gctcgtccagattcttcttcgtttgaagattggaaatattcttcttcacaacaaatccgg
tataaaaccagccatgtttgttcttttataacccatattgtgggcctcagaaaccaccct
gctatagtattcagtgaccatgaattggttacacttgtacgttatcaacaatgccctcgt
gataagtatgctataaaagttttcaatactacttctatggaggtgggttaccttcatgat
caagcttcggctgctttatctcctttaattgatgctcaaatgattaatcttgaaggtgag
gtgactgattcaagaactggagatgttaagtactctgttccttgtctcgttagagtcttt
tcaaagtcaactgacctagagaatgttacacaatcgatttttggaaatactttgagcttc
actggtgagcctcgtacaaatcccgagacaaatgagggtaagggggataaagaaaagggt
aggatagagaaattggggactttagagccaccaaaggaggtgattaaagctaaacttctt
gatcatcaaaaggtgggtttgtggtggttggtgaataaagagaactctgatgagttgccc
cctttttgggagatgaaagatgggttgtatgtgaatgttttaacaaggaatcgaacgaat
aggaaaccggagcctttgcatggcgggatttttgctgatgattatggaacgggcaaaact
ctaactttgctttctttgattgcttttgataaggttggcaatgtccctgaaggaacaggt
gaggaggatgagggagtgtctgtttgtagttgtaagaagagaggaagggtgagtgaaaag
ggtactggagaaccaaatacacatacccttttggatagcaatataaaagaaagttctggg
ggcatggctgataagtcttctagtgcttcggtggctaagcaaacattaattgtgtgcccg
tcttctgtgtgttcaacatggaaaaaccaactactggagcacacagaaaaaggatcgctc
aagttacacaagtattatggggatagcaagattaaggatgttgaggagcttaagagatac
gatatagtgttgacaacgtatggtgccttcgctaatgagtcctttgaaaggtggtgccca
ttgttgaagatcgagtggtggcgagtcattttggatgaggctgatgtgattaagaatgca
aatgccatgcaaagtaaggcagtcgctggtttgaccgctaggaggaggtgggctgttaca
ggagcacccatccagaatggatcgtttgatttatttgccttgattgcatttttgcgatta
gatccactctctaaaaaaagctactggcaaagcctgttggagaggccacttgctaagaag
gatgggaatggattctcgcgactgcaggatttaatggcggccatttctttgcggagaacg
aaagacagggttttagttggccgattacgatcaaaaactgtagagacagttcgctttaaa
atttatggagacgaacgtgaactgtatgatcagatggaagcagaatccaagaaagttgtc
cgcaaactcattgctactggtagactaaacagaatctctgcatctatacgcggtgcagtc
atacgacttcgccagatgtgtaatgatgcaaccccgttctcgttgtatctcaaatcattg
ctaccttctgacgatataggagatgcatcagaacacccagaattgctccgaaagttgatc
gatgtgcttcgcgaagatgaagattttgactgtgcaatttgttattgtccaccaactgat
gctgtgatcacaatatgtaaacatgtattttgcaaacgatgcattgggacttgcctgcag
agaaccagaaccagctgcccaatttgtcgtggtcgtatttcgatgtctgacctgttctca
gctcctcctgaatcttccgatcctgaagatcctagaaaatctacagcaataattccttcc
aaagtctcaactctcataaaactcctgaaggaatctagggacgtgagaccaaccagtaaa
tcagtggtttttacaatattccagaagatgttggtaatacttgaagggccactgaaagac
gctggcttcaatgtattgcggttggatgcattagcagatgctagaaggagaggtggaata
atcaagaaatttcgatcagcaggacagaacacagttctgcttgcgaacgttaaagtttca
ggagccggcataaacctcacagctgcttccgaagtctacttgttggagccgtggtggaac
tcagaattggaggaacaggcaatagaccgtgttcaccaatatggacaggagaagaatgta
ataattgttagattgattgttcaagatagcattgaagaaaggatattgatgatgcaggaa
aggaagaaacaggcaattgaagctttcggaatgcggggacccaaggaacgacgcgaggtt
agcttagaagacctctgtagcctcttatccttggaataa

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