Populus nigra (Lombardy poplar): 133677029
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Entry
133677029 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133677029 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133677029
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133677029
Surveillance factors
Other surveillance factors
133677029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
133677029
NCBI-ProteinID:
XP_061954845
LinkDB
All DBs
Position
1:complement(16853715..16861586)
Genome browser
AA seq
1705 aa
AA seq
DB search
MTDENLLDDLLLLLSPKSTDERLSSFKDRGGIGEGKALLSLPDDSKDQVAADNTIPLSPQ
WLYAKPVDAKSLTTGASGETRASNSLSHGNSIDNNLKDNWRLDGSQDKKDRRRIAPDVES
SRRWREEERDTGLLGRKDRRKEDNRADSVSARDISETRTLSSSDRWHDGNSRNSAHESRR
DSKWSSRWGPEDKEKDSRTDKRADVEKDDAHSDKQNFGTASHPNSEPNSERENDSRDKWR
PPSERENDSRDKWRPRHRKDIHSSGPAAYRSAPGFGLDRGRLESPNVRFAAGRGRSNNSG
NLQIGRHLTASSIGSIPLDKNHAFCYPRGKLLDIYRKHKTLPSFDTIPEGIELVSPLTQE
ISIKPLAFVAPDAEEEAVLGDIWQGKITSSGALNNSFREKNDSSSNTTAGFGEGALSEGN
ESFSVKTEEIAHSFGKITGNASGQGTVAETLETSMAEEKDVHKDDKQKLTTTIARALMDG
FAPADFKNDDPSSFGESGLSDNIMELKAFERQPVEDVDFQNNLKLEDIEPATSFEMDNQL
PDDSSSLFDFSSAQKNPTSHQFSLNRNSEVHQFGGAITPEELSLCYLDPQGAIQGPYLGI
DIIAWFEQGYFGTDLPVRLSDAPDGSPFHELGDIMPHLKLKPGCASSTSPSAKLQLSDAV
GESLEGSTVTLASVEFKASAVREDQQRASSGFEAISNVSGQSRVPDHSFLGGMEYSDDRR
FQNVVTPDEEIIFPGRPGSSGNPLMRDVADFQRFAPNPSTNPAILNEFSDTGMHTHQDEI
VHPFGLSMSELRSNSNLRRAQSSNMASSMGDEFPAQVHAMDPYTEHDAALSSHRSFDAVF
DQSHYAETWPEDYRKKPLTNPHIDLGSADARHLFHRQPEFNDFDQQHLMLQKMQKECQQQ
NHLSHPFSHTMELGFEQIPSNLIELQFQRQQQLELQQRQQQLELQQRQQLELQQRQQQLE
LQQRQQLELQQRRQLELQQRRQVELQRRQLEHQQQQRQFELQQQHHLLHQQQQQLRQYQM
KLQQQQVLEQLLQHQMPDLGYSQGKGDPLRENLLEQIQFRTRLAAELQQNSHNPRHLDLS
LEQIIRAKIGQNNLQEPQTDILDHLSQVKHGNILPSDLQFHLQQEQMQAQELSLPRQQLG
MDGESQVGWPWSIDEAGQTFRNTTGHHQSKSTGFNASDFFLQQQRLSSHDEHLSHNKWNH
ALQEPHQGGFYEPSSMAFDHPTSLPAVTPGMKLDNVNGHSQGPDSAEHLYMHSTDQLGSF
LSNVSSHHRQVFGDIYGSRAEMMESHLPGKQGQQENSWVEGGMQQLHLEAERKRNVSEVA
GNSSFWTSAGGDEESSKQVLMDLHQKMGLQSIRSPEDDYQHLISSSKSRESFWPITESFS
LNDIPDQEATMNDTFMEKPQNLKSNSLLQDNHAMSLSGQLHHLGNGERLSLRSKSGALTE
EPTFLSGIVDTSHTNHVDNMFGDKSAMDKELAELDSRYGSKGMSAMARSVSHIEESFVEQ
AETAMDFANASSRHSSLSSAGGNGGLHGYEMRLDKSTGEEVSIDRMPAILTRGVDNALHK
RPPVSQALSSKDVLSDMASASHIKQKNRASLATSDERRNEPVENVAATLGGDNQISGKKE
GRFRRTSSYNDAGITETSFMDVLKKPVFTEAEAASAAALESSDGSVGGRSGKKKGKKGRQ
IDPALLGFKVSSNRIMMGEILHLDE
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaaaatctcctcgacgatctcctcctcctcctctctcccaagtcaaccgat
gaacgcctctcctccttcaaagatcgaggaggaataggtgagggcaaggctctgttgagt
ttgcctgatgactcaaaagatcaagtggctgcagacaacactatacctctttctccacaa
tggctttatgctaaaccggtggatgctaagtcgttgactactggggcatcaggggaaaca
cgtgcttcaaattctttgtcccatggaaactccattgataacaatttgaaagacaattgg
cgtttagatggatcccaagacaagaaagatcggaggaggattgctcctgatgttgaaagc
agccgccgttggcgtgaggaggagagggatacaggtttgcttggtagaaaagatcgcaga
aaagaagacaatcgtgctgattctgtttcagctagagatatatctgagactagaactttg
tcttcttcagatcgttggcatgatggcaatagccgcaattctgcgcatgaatcccgaaga
gacagcaagtggtcatctaggtggggtcctgaagataaagagaaggattctcgaacagat
aagagggcagatgttgagaaggatgatgctcacagtgacaaacaaaattttggtactgct
agccacccgaattctgagccaaattctgagcgtgagaacgattctcgtgataagtggagg
ccaccttctgagcgcgagaacgattctcgtgataagtggaggcctcgccatcgtaaggat
attcattctagtggacctgctgcatacaggagtgcacctggatttgggttagatagagga
cgtctggagagcccgaatgtgcggtttgctgctggaagaggaaggtccaacaatagtggg
aacttacaaattggcaggcatcttactgcttcttctattgggtctattcctctggataag
aatcatgcattctgctatccaaggggaaaacttcttgacatttaccgtaagcacaagact
cttccaagttttgataccataccagaagggatcgagcttgtgtctccactaacacaggag
atttctattaagccattggcttttgttgcacctgatgcagaggaagaggctgtccttgga
gatatatggcagggaaaaattacaagcagtggagcactgaacaactcatttagagaaaag
aatgattcatcaagtaataccactgcaggctttggtgagggggctttaagtgaggggaat
gagagtttctctgttaagactgaagaaattgcacactcttttggaaaaattactggtaat
gcttctggtcaaggtactgtcgctgagacattagaaacatcaatggctgaggaaaaggat
gtgcataaagatgataaacagaagctcacaacaacaattgccagagcattgatggatggc
tttgcacctgcagatttcaagaatgatgatcccagcagttttggggagagtggtctgagt
gacaacattatggagttaaaagcttttgaaaggcagccagtggaagatgtggattttcag
aataaccttaagttggaggatattgagccagctacttcttttgagatggataaccagctt
cctgatgattcaagttctctatttgatttttcttctgcacagaaaaatccaaccagccat
cagttttccttgaatagaaatagtgaggtacatcaatttgggggtgctatcacacctgag
gaactatcattgtgctatcttgatcctcaaggggcaattcagggaccataccttggtatt
gatattattgcatggtttgagcaaggatattttggaactgacctaccagttcgtttgtca
gatgctcccgatggatcacccttccatgagcttggtgatattatgcctcacctaaaactt
aaacctgggtgtgcttcaagtactagtccatctgctaagttacagctatctgatgctgtt
ggagaaagcttggaagggagcacagtgactcttgcttccgttgaatttaaggcttctgct
gtcagggaagaccaacagagggcttcatctggatttgaggccatctccaatgttagtggt
cagtcaagagttcctgatcatagttttctcggtgggatggagtattctgatgatcgaaga
tttcaaaatgttgttactccggatgaagaaattatctttcctggaaggcctggaagtagt
ggcaaccctttgatgagagatgttgcagactttcagcgatttgctcctaatccttctacc
aaccctgccatcttaaatgaattttcagacactggcatgcatactcatcaggatgaaata
gttcatccatttggcttgtcgatgtctgagcttagaagcaactctaatctgaggcgtgct
caatcatccaacatggcttcaagcatgggtgatgaatttccagcacaggttcatgctatg
gacccttatacagagcatgatgctgctctttccagtcacaggtcctttgatgcagttttt
gatcaatcccattatgcagagacatggcctgaagattataggaaaaagccactcactaat
ccccacattgatctaggttccgcagacgctcgacacttatttcacaggcagccagagttc
aatgattttgaccagcagcatctcatgttgcagaagatgcaaaaagaatgtcaacaacag
aatcatttatctcatccgttctcacatactatggaactgggttttgagcaaatcccttct
aatcttattgaactgcaatttcaacgtcagcagcagctggagcttcaacagcggcaacag
cagctggagcttcaacagcggcagcagttggagcttcaacagcggcaacagcagctggag
cttcaacagcggcagcagttggagcttcaacagcggcggcagcttgagcttcaacagcgg
cggcaggtggaacttcagcggcggcaattggagcatcagcaacagcagcgacagtttgag
cttcagcaacagcatcatttactgcaccaacagcaacaacagcttcgtcagtaccaaatg
aaactgcagcagcagcaggttctggaacagttgctgcagcatcagatgcctgatcttgga
tatagtcagggaaagggagatccattgagagaaaacttgcttgagcagattcaatttagg
acacgactggcagccgaactgcagcagaattcacataatccaaggcacctcgatctatca
ctggagcagataattcgagctaagattggccagaataatcttcaagaaccccagactgat
atcttggaccacttatcacaggtgaagcatggtaatatactcccttcagacctgcagttc
catcttcagcaagaacagatgcaggcgcaagagttatctttgccaaggcaacagttagga
atggatggtgaaagccaagttggttggccatggtccattgatgaagctggtcagaccttc
agaaatactactggtcatcaccagtctaagtctacaggatttaacgcttcagattttttc
ctgcaacagcagaggctttcctcacatgatgaacatttaagccataacaaatggaatcat
gctttacaggagccacatcagggtgggttttatgagcctagctctatggcatttgaccat
ccaacatctctccctgctgtcactcctgggatgaagttggataatgtaaatggtcattcc
caaggtccagattcagcagagcatctatatatgcattctactgatcaactgggttccttc
ttgtccaatgtctcttctcatcatcggcaagtatttggtgatatttatggttctcgcgct
gaaatgatggagagccacctccctggaaaacaagggcagcaagagaatagttgggttgaa
ggagggatgcaacagttgcatcttgaagctgaaagaaaaaggaatgtttcagaagttgct
ggaaactctagtttttggacctcagcaggaggagatgaggagagctcaaagcaagtttta
atggatcttcaccaaaaaatgggtcttcagtctattcggtcaccagaagacgattatcag
caccttatatcttcctctaaatctcgggaatccttttggccaatcaccgagtcgttctct
ttaaatgatattccagatcaagaggccaccatgaatgacacatttatggaaaagcctcaa
aatttgaaatcaaattctctgctgcaggataatcatgctatgtccttgagtggtcaatta
caccatctaggaaatggtgaaagattgtccctaaggtcgaaatctggagcactaactgaa
gaaccaacattcttgtcaggcatagtagatacttctcatactaatcatgtggataacatg
tttggtgataaatctgccatggataaagaattggcagaattggatagcagatatgggtcc
aaaggcatgagtgccatggccaggtctgtttcgcacattgaagagagctttgttgaacaa
gctgaaactgctatggattttgctaatgccagtagcaggcatagttccctgagcagtgct
ggtggtaatggaggcctacatgggtatgagatgagattagataaatcgactggtgaagag
gtctctattgacaggatgcctgctattttaactagaggcgttgacaatgccttgcataaa
cgcccaccggtgtcacaggccttatcttctaaggatgtcttgtcagacatggcatctgct
tcacatatcaagcaaaaaaatcgggcaagccttgcaacttcggatgaaaggaggaacgag
cctgtagagaatgtagcagcaacgctgggaggtgataatcagatatctggcaagaaagaa
gggcgttttaggaggacttcatcttacaatgatgctggtataacagagacatcatttatg
gatgtgctaaaaaagccagtttttactgaggctgaagcagctagtgcggctgccttggaa
tcatctgatggttcagtgggtgggcgaagtgggaaaaagaaagggaagaaaggaaggcag
attgatcctgctctccttggcttcaaagtttctagcaatcgcattatgatgggtgagata
ctacatcttgatgagtaa
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integrated database retrieval system
