Populus nigra (Lombardy poplar): 133677046
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Entry
133677046 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133677046
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133677046
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133677046
Surveillance factors
Other surveillance factors
133677046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
133677046
NCBI-ProteinID:
XP_061954874
LinkDB
All DBs
Position
1:complement(16894921..16902799)
Genome browser
AA seq
1688 aa
AA seq
DB search
MTDGKPNLPDDLLLLSCKSTDERLSSFKDRGGIGEDKALLSLPDDSKDQVTADNTIPLSP
QWLYAKPVDAKLSTTGASGETRASNSLSHGNSSDSNLKDNWRLDGSQDKKDRRRIAPDVE
SSRRWREEERDTGLLGRKDRRKEDHRADSVSARDISETRTLPSSDRWHDGNNRNSAHESR
RDSKWSSRWGPEEKEKDSRNDKRADIEKDEAHSDKQNFGTASRPTSERENDSRDKWRPSS
ERENDSRDKWRPRHRMEVHSGGPAAYRSAPGFGSDRGRVESLNVRFAAGRGRSNNSGNLQ
IGRHLTASSIGSIPMDKNHAFCYPRGKLLDIYRKHKTLPSFDTIPDGMELVSPLTQEIAI
KPLAFVAPDAEQEAVLGDIWQGKITSSGGLNNSFREKNESSNNNTSGIGEENVSFSVKTE
EIADSFGKITGNASGQGMGAETFNASMAEEKDTHKDDKQKCVTTIGRVLMDGFVPAVFKR
DESSSVGESGLIDNVVDLKAFERQPVADVAFQNNLKLEDIESATSFEIGSQLPDDSSSLF
DFSSAQQNSRSHQFSLNINNDGHQFTGTIMPEELSLCYLDPQGAIQGPYLGIDIIAWFEQ
GYFGTDLPVRLSDAPDGSPFHELGDIMPHLKLKPGCASSTSLSAKVQLSDDVGESLEGST
ATSASLEYKVSAVREDQQRVSSGFEAIFSATGQSRVPDHGFLSGMEYSDDQRFQNVVTPD
EEIVFPGSSGSSGNPLMRDVADVQRFVRNPSTNPAILNEFSEAGMHTHQDEIVHPFGLSM
SELSSNSNLRRAQSSNMASGMGDEFPAQVHAMDSYTEHDAALASHRSFDAVFDQSHYAET
WPEDYRKKPLTNPHIDLSSADARHLFHRQPEFNDFDQQHLMLQKMQKECQQQNHLSHPFS
HTMELGFEHIPSNLIELQFQRQQQMELQHQHQVELQQRRQVELQQRRQLELQQELQQRRQ
VELQQRRQVELQQQQRQFELQQQHHLLHQQQQQLRQYQMKLQQQQVLEQLLQHQMPDLGY
GQGKGDPLRENLLEQIQFRTRLAAELQQNSHNPRHLDLTLEQIIRAKIGQNNLQEPQTDI
LDLLSQVKHGNILPSDLQFHLQQEQMQAQDLSVARQQLGIDGERQVGWPWSIDEAGQTFR
NTTGHHQSKSTGFNASDFYLQQQRLSSHDEHLSHNKWNHALQEPHQGGFYEPSSMAFDHP
TSLPAVTPGMKMDNVNGHSQGPDSAEHLYMHSTDQLGSFSSNVSSHHRQVFGDIYGSRAE
MTESHLPGKQGQQENSWVEGGMQQLHLEAERKRNVSEVAGNSSFWTSAGGDEESSKQVLM
DLHQNMGLQSIRSSEDDYRHLISSSKSRESFWPITESFSLNDIPDQEATMDDSFMEKPQN
LKSNSLLQDNHAMSLSGQLHHQGNGERLSLRSKSGALTEEPTFFSGIVDSSHTNHADNMF
VDKSAMDKELAELDNRYGSQGMTAMARSVSHIEENFAEQAETAMDFANASSRQSSRHSSL
SSAGGNGGLHGYEMGLDKLTGEEVSIDRMPSILTRGLDSALHKRPPVSRAYSSKDVSSDM
ASSLHIKQKNRASLATSDERRSEPVENVAATRGGDSQTSGKKEALFRRSSSYNDAGITET
SFMDVLKKPVFTEAEAANAAALESSDGPLSGRSGKKKGKKGRQIDPALLGFKVSSNRIMM
GEIQHPYE
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgactgacggaaagccgaatctccctgacgatctccttctcctctcttgcaagtcaacc
gatgaacgcctctcttccttcaaagatcgtggaggaattggtgaggacaaggctctgttg
agtttgcctgatgactcaaaagatcaagtgactgcagacaacactatacctctttctcca
caatggctctatgctaaaccggtggatgctaagttatcaactactggggcatcaggggaa
acacgtgcttcaaattctttgtcccatggaaactccagtgatagcaatttgaaagacaat
tggcgtttagatggatcccaagacaagaaagatcggaggaggattgctcctgatgttgaa
agcagccgccgttggcgtgaggaggagagggatacaggtttgcttggtagaaaagatcgc
agaaaagaagaccatcgtgctgattctgtttcagctagagatatatctgagactagaact
ttgccttcttcagatcgttggcatgacggcaacaaccgcaattctgctcatgaatcccga
agagacagcaagtggtcatctaggtggggtcctgaagagaaagagaaggattctcgaaat
gataagagggcagatattgagaaggatgaggctcacagtgacaaacaaaattttggcact
gctagccgcccgacttccgagcgtgagaatgactctcgtgataagtggaggccatcttct
gagcgtgagaatgactctcgtgataagtggaggcctcgccatcgtatggaagttcattct
ggtggacccgctgcttacaggagtgcacctggatttgggtcagatagaggacgtgtggag
agcctgaatgtgcggtttgctgccggaagaggaaggtccaacaatagtgggaacttacaa
attggcaggcatcttactgcttcttccatcgggtccattcccatggataagaatcatgca
ttctgctatccgaggggaaaacttcttgacatttaccgtaagcacaagactcttccaagt
tttgataccataccagatgggatggagcttgtgtctccactaacacaggaaattgctatt
aagccattggcttttgttgcacctgatgcagagcaagaggctgtccttggagatatatgg
cagggaaaaattacaagcagtggaggattgaacaactcatttagagaaaagaacgagtca
tcaaataataacacttcaggcattggtgaggagaatgtgagtttctctgttaagactgaa
gaaattgcagactcttttggaaaaattactggcaatgcttccggtcaaggtatgggtgct
gagacgttcaatgcatcaatggctgaggaaaaggatacgcataaagatgataaacagaag
tgcgtgacaacaattggcagagtgttgatggatggctttgtgcctgcagttttcaagaga
gacgaatccagcagtgttggggagagtggcctgattgacaacgttgtggatttaaaagct
tttgaaaggcagccagtggcagatgtggcttttcagaataaccttaagttggaggatatt
gagtcagctacttcttttgaaattggtagccagctccctgatgattcaagttcactattt
gatttttcttctgcacagcaaaattcaagaagccatcaattttcattgaatataaataat
gatgggcatcaattcacgggtactatcatgcctgaggaactatcattgtgctatcttgat
cctcaaggggcaattcagggaccgtaccttggtattgatattattgcatggtttgagcaa
ggatattttggaactgacctaccagttcgtttgtcagatgctcccgatggatcacccttc
catgaacttggtgatattatgcctcacctaaaacttaaacccgggtgtgcttcaagtact
agtctgtctgctaaggtacaactatctgatgatgttggagagagcttggaagggagcaca
gcgacttctgcttctcttgaatataaggtttctgctgtcagggaagaccagcagcgggtt
tcatctggatttgaggccatctttagtgctactggtcagtcaagggttcctgatcatggt
tttctcagcgggatggagtattctgatgatcaaagatttcaaaatgttgttactccggat
gaagaaatcgtctttcctggaagttctggaagtagtggcaaccctttgatgagagatgtt
gcagatgttcagcgatttgttcgtaatccttctaccaaccctgccatcttaaatgaattt
tcagaagctggcatgcatactcatcaggatgaaatagttcatccgtttggcttgtcaatg
tctgagctcagtagcaactctaatcttaggcgtgctcaatcatccaacatggcttctggc
atgggtgatgaatttccagcgcaggttcatgctatggactcttatacagagcatgatgct
gcccttgccagtcacaggtcctttgatgcagtatttgatcaatcccattatgcagagaca
tggcctgaagattacaggaaaaagccactcactaatccccacatcgatctaagttccgca
gatgctcggcacttatttcacaggcagccagagttcaatgattttgaccagcagcatctc
atgttgcagaagatgcaaaaagaatgtcaacaacagaatcatttatctcatcccttctca
catactatggaactgggttttgagcatatcccttctaatcttattgaactgcaatttcaa
cgtcagcagcagatggagcttcaacatcaacatcaggtggagcttcaacagcgtcggcag
gtggagcttcaacagcggcggcagctggagcttcaacaggagcttcaacagcggcggcag
gtggagcttcaacagcggcgacaggtggagcttcagcaacagcagcgacagtttgagctt
cagcaacagcatcatttactgcaccaacagcaacaacagcttcgtcagtaccaaatgaaa
ctgcagcagcagcaggttctggaacagttgctgcagcatcagatgcctgatcttggatat
ggtcagggaaagggagatccattgagagaaaacttgcttgagcagattcaatttaggaca
cgactggcggccgaactgcagcagaattcacataatccaaggcacctcgatctaacactg
gagcagataattcgagctaagattggccagaataatcttcaagaaccccagactgatatc
ttggacctcttatcacaggtgaagcatggtaatatactcccttcagacctgcagttccat
cttcagcaagaacagatgcaggcgcaagatttatctgtggcaaggcaacagttaggaatt
gatggtgaaaggcaagttggttggccatggtccattgatgaagctggtcagaccttcaga
aatactaccggtcatcaccagtctaagtctacaggatttaacgcttcagatttttacctg
caacagcagaggctttcctcacatgatgaacatttaagccataacaaatggaatcatgct
ttacaggagccacatcagggtgggttttatgagcctagctctatggcatttgaccatcca
acttctctgcctgctgtcactcctgggatgaagatggataatgtaaatggtcattcccaa
ggtccagattcagcagagcatctatatatgcattctactgatcaactgggttccttctcg
tccaatgtctcttctcatcatcgacaagtttttggtgatatttatggttctcgcgctgaa
atgacagagagccacctccctggaaaacaagggcagcaagagaatagttgggttgaagga
gggatgcaacagttgcatcttgaagctgaaagaaaaaggaatgtttcagaagttgctgga
aactctagtttttggacctcagctggaggagatgaggagagctcaaagcaagttttaatg
gatcttcaccaaaatatgggtcttcagtctattcggtcatcggaagacgattatcggcac
cttatatcttcctctaaatctcgggaatccttttggccaatcaccgagtcgttctcttta
aatgatattccagatcaagaggccaccatggatgactcatttatggaaaagcctcaaaat
ttgaaatcaaattctctgctgcaggataatcatgctatgtccttgagtggtcaattacac
catcaaggaaatggtgaaagattgtccctaaggtcgaaatctggagcactaactgaagaa
ccaacattcttttcaggcatagtagattcttctcatactaatcatgcggataacatgttt
gttgataaatctgccatggataaagaattggcagaattggataacagatatgggtcccaa
ggcatgactgctatggccaggtctgtttcgcacattgaagagaactttgctgaacaagct
gaaactgctatggattttgctaatgccagtagcaggcagagtagcaggcatagttccctg
agcagtgctggtggtaatggaggcctacacgggtatgagatgggattagataaattgact
ggtgaagaggtctctattgacaggatgccttctattttaactagagggcttgacagtgcc
ttgcataaacgcccgccggtatcacgggcctattcttccaaggatgtgtcgtcagacatg
gcatcttctttgcatatcaagcaaaaaaatcgggcaagccttgcaacttctgatgaaagg
aggagtgagcctgtagagaatgtagcagcaacccggggaggtgacagtcagacatctggc
aagaaagaagcgctttttaggaggtcctcatcctataatgatgctggtataacagagaca
tcatttatggatgtgctaaagaagccagtttttaccgaggctgaagccgctaatgcggct
gccttggaatcatctgatggtccactgagtgggcgaagcgggaaaaagaaagggaagaaa
ggaaggcaaattgatcctgctctccttggcttcaaggtttctagcaatcgcattatgatg
ggtgagatacaacatccttacgagtaa
DBGET
integrated database retrieval system
