Populus nigra (Lombardy poplar): 133677183
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Entry
133677183 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133677183 isoform X1
KO
K06100
symplekin
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133677183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133677183
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133677183
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133677183
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133677183
U7-dependent histone pre-mRNA processing factors
133677183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
DUF7237
Motif
Other DBs
NCBI-GeneID:
133677183
NCBI-ProteinID:
XP_061955031
LinkDB
All DBs
Position
17:complement(2459652..2471990)
Genome browser
AA seq
1357 aa
AA seq
DB search
MVAMTKSSSRERLASLINSAKSASDIPSKLQTLRQLNQILQQQENANSLSEFLPRIFEFQ
SDQHSPVRKFATEMIGEIGLKHLEFVPEIVPVLMLVLEDLVPAVARQAITCGISLFRATL
EKLAIQGLYASELDDLLKSSWSSMLEFKEKIYSIAFQLGSGGVRLLALKFVEEVILLYTP
DPYGTSEPPSHEGSSVEFNISWLRGGHPVLNVGDLSIEASRKLSLLLDQLRMPTVKSISN
LMIIVLVNSLATIAKKRPPCYGRILPVLLGLDPSNSVIEGMHGYGAHHALKNAFLTCLKC
NHLGAAPWRDRLVGVLKEMKAGELAEEALQVLRSNGSVEEAKEDFLVAQEEKLSIKSSDG
IPNNSARKRSGPEDSIDLADLAKDDDVSGKRVKSSPSVSEESSKELDHRANKKDDDNGPV
QQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRYLPTGHPHAEGDDESLLN
MTIVGSDTRAKYPSSFLTNVLSLSSSFPPIAAQLNAGHSVSKDILTTDEEELQMTTDEEE
LQTTKDEEELHVAAADVADVYTGKALGAEDELMPAGLPASSNVDLSAMQMDGLAISSNIH
DFENLDSEIPGLDSSARNDVFSETMGASSLVSTDIEDASQEQGTSLGTRSNQEVLPSISN
DRSEELSPKAAATDSNSLISSTATSVRLHQPLVLPKMSAPVVNLVDEQKDQLHNLAFIRI
IEAYKQIAVAGSSQFRLSLLASLGVEFPSELDPWELLKKHILSDYVVHEGHELTLHVLYR
LFGEVEEEHDFLSSTTAASVYEMFLLTVAETLRDSFPPSDKSLSRLLGEAPYLPDSIFSL
LESLCSPGNIDKAEELQSGDRVTQGLSTVWSLILLRPPIRESCLKIALQSAVHHLEEVRM
KALRLVANKLYPLSSIAQQIEDFAKEKLLSVVNSDATESMDAEGSFSESQKDSILEKPSN
EHQSMSAISKDISSETHQSCTSESVSSLSISEAQRCLSLYFALCTKKHSLFRQIFIVYKS
ASKAVKQAVNQHIPILVRTMGSSSDLLEIISDPPIGSENLLMQVLQTLTEGAVPSPELLF
TIRKLYDSKIKDAEILIPILPFLPRDEILLIFPHLVNLPLDKFQIALARTLQGSSHSGTM
LSPAEVLIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLL
FMRTVLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFNVLLQLP
PPQLENALNRTAALKAPLVAYASQPNIKSSLPRSVLVVLGIAPDPQTSSQAQTSLAQTGD
TNSSNKDVTVENSKTGETSNSVKEVLTEKSKESSVAS
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggtagccatgacgaaatcgagttcaagagaaagactagcgagtctcatcaactcagcc
aagtctgcctctgacataccgtcaaagctccaaactttgcgtcaattaaaccaaattttg
caacaacaagaaaacgctaactcactctctgagttccttcctcgaattttcgagtttcag
tctgatcagcactctcctgttcgcaaatttgccactgagatgattggagagattggattg
aagcatttagaatttgtgcccgaaattgttccggttttaatgttagttttggaagatctt
gtaccggctgttgctagacaagctattacttgtgggatcagtttgtttcgggctactctc
gaaaaacttgcaattcagggtctttatgctagcgagctggatgatttgcttaagtcttcg
tggtcatcgatgttagagttcaaggaaaaaatttactccatagcttttcagctgggaagt
ggtggtgtaagattgctggcactaaagtttgttgaagaagtcattcttctttacactcct
gatccttatggcacttcagagcccccttctcatgaaggatcaagtgtggaatttaacata
tcatggctccgtgggggccaccctgtactaaatgttggagatttgtcaattgaggccagc
agaaaattgagtttattgctcgatcagcttaggatgccaacagtgaaatctatcagtaac
ttaatgatcattgtgcttgttaatagccttgccacgattgcaaagaaaaggcctccatgc
tatggacgcattctgccagttttacttggtttggatccctcaaactctgttattgaaggg
atgcatggttatggggcacatcatgctttaaaaaatgccttcctcacctgcttgaagtgc
aatcacctgggtgctgcaccgtggcgggatcgtttagttggtgttctaaaagagatgaaa
gcaggagagttggcagaggaagcgctacaagttttaaggagcaatggaagtgtagaggag
gcaaaggaagattttctagttgcacaggaagaaaaactctcaattaagtcatctgatggc
attccaaataattcagcaaggaaacgatctggaccagaagacagtattgatttggctgat
ttggctaaagatgatgatgtgtctggaaaacgtgtcaaatcatcccccagtgtctcggag
gaatcatctaaagagttggatcatagagctaacaaaaaagatgatgataatggacctgtg
cagcaacttgttgctatgtttggagccttggttgctcaaggtgaaaaagctgttggttct
ttggagattcttatttcaagcatctctgctgacttgttagctgaagtagtgatggctaac
atgcgctaccttcctaccggtcatccccatgcggaaggagatgatgagtcactattgaac
atgactattgttggcagtgacactagagccaagtatccatcatcttttctgactaatgtt
ctttcactttctagttccttcccacctatagctgcacaactgaatgctggtcattcagta
tccaaagacatactgacaacagacgaagaagaactgcagatgacaacagacgaggaagaa
ctgcagacaacaaaagacgaggaagaactccatgttgcagcagctgatgtcgctgatgta
tatactggaaaagctcttggtgctgaagatgaactgatgcctgcaggtttacctgcttct
tcaaatgtcgatttatctgcgatgcagatggatggtttggctatttcatccaatatccat
gattttgagaatttagatagtgaaatacctggtctagattcttctgctcgtaatgatgta
ttttcagagaccatgggtgcttcttcactggtctctactgatattgaagatgccagtcaa
gagcaaggtacaagtctgggtacaaggtcaaaccaggaagtgcttccatcaatatcaaat
gacaggtcagaggagctaagtccaaaagcagctgctacggattccaacagcctgatctcc
tcaactgcaacatctgtgcgtttacaccagcctcttgttctgcctaagatgtctgcacct
gttgtcaatcttgttgacgaacagaaggatcagctgcataatttggctttcatacgcatc
attgaggcatacaagcaaatagcagttgctggaagttcacaatttcgtctttccttgctt
gcttctttaggagttgagtttccttcagagttagacccttgggaactccttaaaaagcac
atattgtcagattatgtggttcatgagggacacgagttgacattgcatgtcctctacagg
ttatttggtgaggtagaagaggaacatgacttcctttcttctacaaccgctgcttctgtg
tatgaaatgttccttctgactgtggctgaaacgcttagagattcttttcctccttcagac
aaatctttaagtagactgcttggtgaagctccttatcttccagattcaattttcagtcta
ttagagtccttgtgttctcctggaaacatcgataaagctgaggagttgcaaagtggagat
cgagttactcaaggtctcagcactgtatggagcctgattttgctgaggcctcctattcga
gaatcctgcttaaaaattgctctgcagagtgcagttcatcatttggaagaagtgcgtatg
aaggcacttcgtctggtggcaaataagctttatcctctctcatccatcgctcaacagata
gaagatttcgcaaaggaaaagctgctttctgtggtaaatagtgatgctacagaaagcatg
gatgctgaagggtcattctctgaatcacagaaggattcgattttggaaaaaccatcaaat
gagcatcaatctatgagtgccatcagtaaagatatctcctctgagactcatcagtcatgc
acatctgaaagtgtatcatcactctcaatctcagaggcccagcggtgcttgtcactgtat
tttgccctgtgcacaaagaagcactccctttttcgccaaatttttattgtttataaaagt
gcatcaaaggcagttaaacaggcagttaatcagcacattcctatactagtccgtactatg
ggttcgtcatctgatcttcttgaaataatttcagatcctcctattggaagcgagaatctt
ctgatgcaggttttacaaacactgacagaaggggcagttccttcacctgaattgttattc
accattaggaagttgtatgattcaaaaataaaggatgcagagatcctaattccaatatta
ccattcctacccagagatgagattttgctgatctttccccatttagtgaatcttcctctg
gataagttccaaattgcacttgctcgtacactacagggatcatctcattctggtacgatg
ctctctccagctgaagtattaattgccatccatggtattgatcctgacagggacggaatc
cccttgaagaaggttacagatgcttgcaatgcttgttttgagcaacgacagatattcact
cagcaagttcttgcgaaggtcttaaatcagttggttgagcaaattcctcttcctttatta
ttcatgcgcacggtactacaggctataggtgcttttccagcattggtggagtttattatg
gagatcctttctcgtctcgtaagcaagcagatatggaagtacccgaagttgtgggttggc
ttcctgaagtgtgcactattgacgaagcctcagtccttcaatgtgttacttcagcttcct
ccaccccaactggaaaatgcactgaacagaactgcagcactgaaagctcctttggttgcc
tatgctagccaaccaaacattaaatcttcacttccaaggtctgttctggtggtcctggga
atagctccagaccctcagacttcaagtcaagcacagacaagtctggcacaaactggagat
acgaacagctcaaataaggatgtgactgtagagaattcaaaaactggagaaacgagcaac
tcagttaaggaggtgctgacagagaaatctaaagaatcttctgttgctagctga
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