Populus nigra (Lombardy poplar): 133677280
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Entry
133677280 CDS
T10372
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133677280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133677280
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133677280
mRNA degradation factors
5'-3' decay
Decapping complex
133677280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
DUF445
Motif
Other DBs
NCBI-GeneID:
133677280
NCBI-ProteinID:
XP_061955195
LinkDB
All DBs
Position
17:14296210..14305701
Genome browser
AA seq
1571 aa
AA seq
DB search
MASPGNPNQQQQGGGGIIGGGGGFDLNKLFKPSSSNPMNMMQPHIQQQQQQQQGPPPSPN
SNTTTSGNLTTSPSFPLPSSSPPYLTPSSSYPPPTGPYHPFHHPHYLSPYPPPPPPQQLH
NQFLTNTNIHLQNRPQPISSFAPSPPPLSPNNSGGAVLMDILTNQNQQQPPLSTNLSGPF
PSSTPSTAFITTSPPVPSAPPVSLASPTQQCCAPPARMLSTKLPKGRHLNGNHVVYDIDV
RLQGEVQPQLEVTPITKYLSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLR
GHNQKVTDMAFFAEDVHLLASACVDGRVFIRKINEGSDEEEKPQIFERILLALHIIADGE
SFHPRVCWHPHKQEILIVAIGNLILKIDTIKIGKGGAFSVEQPLTCPIDKLIDGVQLVGK
HDGEVTELSMCQWMTTRLASASTDGVVKIWEDRKAVPLAVFRPHDGNPVNSVAFLTAPDR
PDHIVLITGGPLNQEVKIWASASEEGWLLPSDAESWQCTQTLTLKSSAESSAEDAFFNQV
VALPRASLFLLANAKKNAIYAVHLEYGPYPAATQMDYIAEFTVTMPILSLTGTSDCLPNG
ENIVQVYCVQTQAIQQYALNLSQCLPPPLENMVLEKTESNVSCAFDTANSDGSAIMESSH
GSKPIEISTGNMTSTPPMTPSGSESAPVTSHPESLGSSDVGSSLDIASSGGQTKAITISS
RNNTDNTNTVSPHLLLSPKLSRSLSGLQSPANITDPNVQLSGHAGDQPVPDHSVDRRTET
VKENVTDTSTGDNLNKGEKNIEQTGIAMVSEPPVMFKHPTHLITPSEILSRGAASENSQT
TQGLNVGEAKIQDVLVNNDTENVEVEVKVVEETPGSGTVPVSSSKEKPARLTISKSTSSR
LKKKREEFLLKADLAGTTYLHGAYKGPEEKKENDISSELTESTSPILKQTPADALQVDSV
ASEKNKGEPDDWEDAADMSILKLDGDGELSRGESGSNQNNDFDLPRESHTPVAEKKEKPF
YSQASDLGIQMARDCHVEAYSVGAIRQANEGSITEVLDRNPSGVDEEQHITEDVPAKSGE
AETSVAVLQSPAPAPAPATKGKKQKGKSSQVSVPSSPSPSPFNSTGSSNEPGCTSGAQSS
DAALPQILALQDTLDQLLNMQKEMQKQMNTMISVPVSKEGKRLEASLGRSIEKIIRANTD
ALWARFQEENTKHERLEKDRIQQLTNLITNCINKDLPTALEKTLKKEIAAIGPAVARAIT
PILEKSISSAITESFQKGVGEKAVNQLEKTVSSKLEATVARQIQSQFQTSGKQALQDALR
STLEASIIPAFEMSCKAMFDQVDATFQNGLNKHINDIQQQFNSMHSPVAIALRDAINSAS
SLTQTLSGELADGQRQLLAMAAAGANSKVGDPSTKLGNGPLPGMHEMPEVPLDPTKELSR
LIAEQKYEEAFTLALHRSDVSIVSWLCSQVDLQGILSISPLPLSQGVLLALLQQLACDFS
NETSRKLAWMTDVAAAINPTDPMIAMHVGPIFDQVYQIVVHQRSLPSTSASEASGIRVLL
VVINSVLRSCK
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggtaatccaaatcaacaacaacaaggaggtgggggaataataggggga
ggaggaggttttgatctgaataaactgttcaagccctcttcttcaaatcctatgaatatg
atgcagccccatatccaacaacaacagcagcagcagcaaggtcctcctccatctcccaat
agtaacactaccacaagtggcaatctcactacctctccttccttccctctcccttcctct
tctccaccttatctaactccatcttcttcttatccacctcctactggcccttaccaccct
tttcaccaccctcactatctctccccttacccgcctccacctcctcctcagcaacttcac
aatcagttcctcacaaatactaacatccatctccaaaatagaccacaacccatctcttcc
tttgcaccctctcctcctccactctcacctaataattcaggtggtgctgttttgatggac
atcttgaccaatcaaaaccaacagcagcctccgctatccactaatcttagtggacctttc
ccttcttccactccctcaactgcattcatcaccaccagtcctcctgtcccatctgcccct
cctgttagtttagcatctccaacgcagcaatgctgtgctccccctgcgaggatgctcagt
accaagctccctaagggtcgacacttgaatggcaaccatgtcgtgtatgatattgatgtg
agattgcaaggtgaggtgcaacctcaacttgaagtcacacccatcaccaaatatttatcc
gatcctggccttgttctcggccgtcagattgctgttaatagaaattacatttgctatgga
ctcaagcctggtgctattcgtatcctcaatattaatactgctttgagatcattgcttcgg
ggacataaccagaaagtaacagacatggctttctttgctgaggatgttcaccttctggcc
agtgcatgtgttgatgggcgtgttttcataaggaagatcaatgagggctcagatgaggaa
gaaaaacctcaaatttttgaaaggatactccttgcccttcacataatagcagatggagaa
tcattccacccacgagtgtgctggcatccacacaagcaggaaattttgattgttgcaatt
ggaaatctcatcttgaaaattgataccattaagattggaaaaggtggagcattttcagtg
gagcaacctcttacttgtcccattgataagttgattgacggggtccagcttgttggtaaa
catgatggggaagtcactgagttgtccatgtgtcaatggatgaccacccgtttagcttca
gcttcaacagatggcgtggtcaagatttgggaagaccgtaaggcagtaccccttgcagta
ttcagaccacatgatggtaatcctgtaaattctgtggcattcctgactgcccctgaccgc
cctgatcatattgttcttatcactggggggcccctcaatcaggaagtgaagatatgggcc
tccgctagtgaagagggctggttattgcctagtgatgctgaatcatggcagtgcactcag
accttgaccttaaagagttcggctgaatctagtgctgaggatgcattttttaatcaagtt
gtagccctaccccgagccagcctgtttcttcttgcaaatgccaagaagaatgccatatat
gctgtacacctagaatatgggccatatccagctgcaacccaaatggattacatagctgag
tttacagttacaatgcctattttgagtcttactggaaccagtgattgtttaccaaatgga
gaaaatattgttcaggtttactgtgtccaaacacaggctattcagcaatatgcattgaac
ttatcacaatgccttccaccacctctggagaacatggtgttggagaaaacagaatctaat
gtttcttgtgcttttgatactgctaattctgatggttctgctattatggaatcatctcat
ggaagtaaacccattgagatatccacaggtaacatgacttccacaccaccaatgactcct
agcggttctgaaagtgctcctgtaacaagccatccagaaagcttgggttcttctgatgtt
ggtagctcgctagatattgcttcttccggtgggcaaaccaaggctattactatttcatca
cgtaataatactgacaatactaacactgtgtcgccccatctactgttaagtccaaagttg
tctcggtcattgtcaggtctccagagtccagcaaatatcacagatcccaatgtgcaactc
agtggtcatgctggtgaccagcctgttccagatcattcagttgaccgaagaactgaaact
gtgaaagaaaatgttactgatacctccactggtgataatttgaataagggtgagaagaac
atcgaacaaactggtattgcaatggtctctgaacctccagtaatgtttaaacacccaacc
catcttataactccatcggagatattatccaggggtgctgcttctgagaattctcaaact
actcagggtctgaatgttggagaggcaaagattcaggatgtgcttgtgaacaatgatact
gaaaatgttgaagtagaggttaaagttgttgaagaaacccccggcagtggaacagtccca
gtatctagttccaaagaaaaacctgctaggctgactatatcaaagagtacctctagtaga
ttgaagaagaagagagaagaatttcttctgaaagctgatcttgctgggactacttatctt
catggggcatataaaggccctgaggaaaagaaagaaaatgacatatcttcagaactcaca
gaaagcaccagccctattctgaaacagacacctgctgatgccttgcaggttgactctgta
gcaagcgagaaaaataaaggcgagccagatgattgggaagatgctgctgacatgtctata
ctgaaactggatggtgatggggaactatcacgtggagagtcaggatccaatcaaaataat
gactttgacttgcccagagaatctcatacacctgttgctgagaagaaggaaaaacccttc
tactctcaggcctcggatcttggcattcagatggctagagattgtcatgtggaagcttat
agtgttggggcaatccgacaagctaatgaaggtagcattactgaggtacttgatagaaat
cctagtggtgtagatgaggagcaacatataactgaagatgttcctgcaaaaagtggtgaa
gcagaaacatctgtggcagtcctgcagtccccagccccagccccagccccagcaactaaa
ggaaaaaaacagaaggggaaaagttctcaagtatctgttccatcttccccttccccgagt
ccattcaactcaactggttcgtccaatgaaccaggttgcacttctggtgcccaatctagt
gatgctgctttacctcagatattggccttgcaggatactcttgatcagttactgaacatg
cagaaagaaatgcagaagcagatgaatacaatgatttctgtcccagtttccaaagaaggt
aaaagactagaggcatccttgggccggagcatcgagaaaattatcagggctaacacagat
gctctatgggctcgttttcaagaagaaaacacaaaacatgagaggttggagaaggaccgt
atacagcagctaactaatttgatcacgaattgtataaacaaggatttgccaacagctttg
gagaaaactttaaagaaggaaatagctgcaattggacctgctgttgctcgtgctatcact
cccattttggagaaaagcatatcatcagctattacagagtcattccagaaaggggtggga
gagaaggcagtgaatcagttagagaagacggttagttcaaaacttgaagctacagtggcc
agacaaatccaatcacagtttcaaacatctggcaagcaagctcttcaggatgcattaagg
tctacgctggaagcttcaattattcctgcatttgagatgtcctgcaaggccatgtttgat
caagttgatgccacattccagaatgggcttaataagcatataaatgacattcagcaacag
tttaattccatgcattctcctgtggccattgccctgagggatgctatcaattcagcatca
tcactcacccagaccttaagtggagagctggcagatggtcaacggcagctcttagctatg
gcggctgcaggtgcaaactcaaaggtgggagatccatcaacgaagttgggcaatggacca
ttgcctggtatgcatgagatgcctgaggtgcctttggatccaacaaaagaattgtcaagg
ttgatagctgagcagaaatatgaggaagcgttcaccttagctctgcacagaagtgatgtc
tcaatagtttcctggttatgttctcaggttgatctacaggggatattgtcaatttcacca
ctacctttaagccaaggagttctgctggcccttctacagcaactggcatgtgattttagt
aatgaaacctctagaaagttggcatggatgacagatgtggctgctgccataaaccctaca
gatccaatgattgcgatgcatgtaggaccaatttttgatcaagtctatcagatagtggtc
catcaaaggagtctgcccagcacatctgcttcagaagcctcaggcatacgtgttcttctg
gttgtcataaattctgtgctaaggagctgtaaatga
DBGET
integrated database retrieval system
