Populus nigra (Lombardy poplar): 133677382
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Entry
133677382 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133677382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133677382
03012 Translation factors [BR:
pnz03012
]
133677382
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133677382
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133677382
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133677382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
FoP_duplication
Rad17
T2SSE
Motif
Other DBs
NCBI-GeneID:
133677382
NCBI-ProteinID:
XP_061955396
LinkDB
All DBs
Position
17:complement(9283600..9290799)
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AA seq
1034 aa
AA seq
DB search
MFLARRSLGAPSCFSKHLLLAAPALSSTTLSYIHRDISTHAMSRRPNFQGGRRGGGGVPG
RGGDRGRGRGGRGGGRGEQRWWDPVWRAERLRQKQSEMEVLDEDEWWSKMEQMKLRGEQE
IIMKRSFSRDDQQKLSDMAFELGLHFHAYNKGKTLVVSKVPLPDYRADLDEQHGSTQKEI
QMPTEIERRVGNLLNSSQKAAAGNESDATSSQGGKHASLGGKIVKPASMLEIDAAKEKQS
IELKQKQDKLKASSSVKEMQSFREKLPAFKMRTEFLKAVAENQVLVISGETGCGKTTQLP
QYILEEGISSLRGAHYNIVCTQPRRISAISVAARIASERGESLGETVGYQIRLEALRSAQ
TRLLFCTTGVLLRQLVQDPDLTGVSHLVVDEIHERGMNEDFLLIILRDLLPRRPDMRLIL
MSATINADLFSKYFRNAPTIHIPGLTFPVSEFYLEDVLGKTRYEIQELDSFQGNSRQRRR
EQYSKKDPIIELFEAFDIGSQYKNYSASTRLSLEAWSGSQLDLGLVEATIEYICRHEREG
AVLVFLTGWDEISKLLEQIKGNKLLGDQSKFLVLPLHGSMPTINQREIFDRPPLNKRKIV
LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWVSKASAHQRRGRAGRLQP
GVCYRLYPKIIHDSMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLSKALQPPDPLAVE
NAIELLKTIGALDDKEELTPLGRHLCTLPVDPNIGKLLLMGCVFQCLSPALTIAAALAHR
DPFVLPIDRKREADAAKRSFAGDSCSDHIALVKAFEGYKEAKRNRNERAFCWEYFLSPVT
LRMMEDMRDQFLNLLSDIGFVDKSRGVSAYNQYSHDMEMVSAILCAGLYPNVVQCKRRGK
RTAFFTKEVGKVDIHPASVNAGVHLFPLPYMVYSERVKTTSIYVRDSTNISDYALLLFGG
NLVASKNGEGIEMLRGYLHFSASKSVLDLIQKLRGELDKLLSKKIEDPCLDINVEGKGVV
SAVVELLHSYNVRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtttctagctcgtcgctcactcggtgctccctcttgcttttccaaacatctcttacta
gccgcgcctgcgttatcttcaacaactctctcgtacattcatcgagacatctcaactcac
gccatgtcacgccgtcctaatttccaaggcggccgtcgcggaggcggaggtgttcccggt
cgtggtggtgatagaggtcggggacgaggaggacgtggaggaggacgtggtgagcagcgg
tggtgggatcctgtttggagagcggaacgattgagacaaaaacagagtgagatggaggtt
cttgatgaagatgaatggtggagtaaaatggagcaaatgaagcttagaggggagcaagaa
ataataatgaagcgtagttttagccgtgatgatcagcaaaagctgtctgatatggctttc
gaattggggcttcacttccatgcatacaataaaggcaaaacccttgtcgttagcaaagtt
ccactaccagattatcgagctgatctcgatgagcaacatggatccacacagaaagagatc
caaatgcctacagaaatcgagaggagagttggaaatcttttgaatagctcacaaaaagca
gcagctggaaatgagtccgatgcaacttcttctcagggaggcaaacatgcatctcttggt
ggtaaaatagtgaaacctgcttccatgttggaaatagatgctgctaaggagaaacagagt
attgaactaaagcagaagcaggataaattaaaggctagtagcagcgtgaaggaaatgcag
tctttcagagaaaagcttcctgcattcaaaatgagaactgaatttctgaaagcagttgca
gaaaatcaggtattggtaatttcaggggaaacaggttgtggtaaaacaacacagcttcct
cagtatatattggaggagggaatatcatctctacgtggtgctcattacaacatagtatgc
acacaaccccgccgtatatctgccatttctgttgctgcacgaatagcatctgaaagggga
gagagccttggtgaaactgttggctatcaaattcgtctggaagcattacggtctgctcaa
acccggctccttttttgcaccactggtgtgttactccggcagctggttcaggatccggat
ttaactggtgtgagccatttggtagtggatgaaattcatgaaagaggaatgaatgaggac
ttcctgttgattattttgcgcgaccttcttcctcggcgtccagatatgcgtcttattcta
atgagtgctaccattaatgctgacttgttctctaaatacttcagaaatgccccaactatt
catatcccgggattaactttccctgtatcagagttctatctagaagatgtgttggggaaa
actcgctatgaaattcaagagttggacagctttcaggggaattcaagacaaagaagaaga
gagcaatattcaaagaaagatcctataattgaattattcgaggcatttgatattggttct
caatataaaaattacagtgcatcaacaagactttctctggaagcttggtcgggttcacag
cttgacttgggtctggtggaggcaacaattgaatatatttgtcgtcatgaacgtgaggga
gctgttcttgtttttctcacgggctgggatgagatctccaagctacttgagcagattaaa
ggaaacaaacttctaggagatcaaagcaagtttctagtccttcccctacatggttcaatg
ccaaccataaatcaacgtgaaatttttgatcgtccccccctaaacaagcgaaaaattgtt
ctggcaacaaatattgcagagagcagtattaccatagatgatgtggtgtatgttgtagac
tgtggaaaggcaaaggaaaccagttatgatgcactgaacaagctggcttgtttgttacca
tcgtgggtttcaaaggcttcagcacatcagaggcgggggcgtgctggccgattgcaacca
ggagtttgttatagactgtatccaaaaatcatacatgattcaatgcttcaatatcaatta
ccagaaatactgagaacacctttgcaagaactgtgtctgcatataaaaagtttgcagctt
ggagctgttggatcgtttttgtcaaaggctctacagccgccagatcctcttgctgtggaa
aatgcaattgaactacttaaaaccattggggctttagatgataaggaggagcttactcca
cttggtcgtcatctttgtactctccctgtggacccgaatattgggaagttgcttttgatg
gggtgtgtctttcaatgcctcagccctgctttaacaattgcagctgctcttgcacatcgt
gacccatttgtgctgccaatagacaggaaaagggaagctgatgctgcaaaaagatccttt
gctggtgactcttgcagcgaccacatagcacttgttaaagcttttgaaggatacaaggaa
gcaaaacgcaaccgaaatgaaagagcattttgttgggagtatttcttgtcccctgttact
ttgcggatgatggaggatatgagagaccagtttctgaacttgctatcagacattggcttc
gttgacaaatccaggggtgttagtgcttataatcaatatagccacgacatggagatggta
tcagcaatcctttgtgctggtctttacccaaatgttgtgcaatgtaaaagaagaggaaag
cgaacagcattcttcactaaggaagttgggaaagttgacatccatcctgcatctgtaaat
gctggggtccatctcttccctctgccttacatggtttatagtgaaagggtgaaaacaact
agcatttatgtccgagactcaacaaacatttcagattatgctttgcttctttttggtggt
aatctcgttgccagcaaaaatggagagggtattgagatgctaagaggttacctccatttc
tcagcatcgaagagtgtattggatttgatacagaaactgaggggagaactagacaagctt
ctgagtaagaaaattgaggacccatgcctggacattaacgtggagggaaagggagttgta
tctgcggtggttgagttattgcacagttacaatgtaaggtactaa
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