Populus nigra (Lombardy poplar): 133677587
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Entry
133677587 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133677587
03041 Spliceosome [BR:
pnz03041
]
133677587
03036 Chromosome and associated proteins [BR:
pnz03036
]
133677587
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133677587
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133677587
mRNA cycle factors
Common to processing body (P body) and stress granule
133677587
Spliceosome [BR:
pnz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
133677587
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133677587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133677587
NCBI-ProteinID:
XP_061955652
LinkDB
All DBs
Position
17:9892652..9897998
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AA seq
611 aa
AA seq
DB search
MRTSWSDSVANSASENAAASGSSGQRPTRATYIPPHLRNQPPSSDSLAPPPAAPSLGNDR
VGYSGPVGGSRWGGGGGSRPDHGRSGYGSGGRGGGGWNNRSGGRDRGREREVNPFGDDGD
VEPAFGEQENTGINFDAYEDIPVETSGHNVPPPVNTFADIDLGEAVNQNIRRCKYVKPTP
VQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAGIMREQYVQRPHGGRTMYPLALILS
PTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQQLRELERGVDILVATPGRLVDLLER
ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCGMRQTMLFSATFPKEIQRLA
SDFLSNYIFLAVGRVGSSTDLIVQRVEYVQEIDKRSHLMDLLHAQRETEVNSKHSLTLVF
VETKKGADSLEHLLHVNGFLATSIHGDRTQQEREMALRSFKSGKTPILVATDVAARGLDI
PHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNENNMSLARPLADLMQEANQVV
PAWLTRYASRVLHSGGKNRRSAGARFGGRDFRREGSINKGTEYYGGNSNSGYGVPAGYGG
GYNPAVASAWD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcatggtcagattctgtggccaactctgcatccgagaatgcagcagcttct
ggttcgtctggtcagcgtcctacccgtgctacttacattcctccacaccttcgtaaccag
ccgccatcttctgattctctggctccaccacctgctgctccctcactaggaaatgatcgt
gtaggttatagtgggcctgtgggtggctctcgatggggtggtggtggtggttcgagaccg
gatcatgggcgttccggttatggttctggtggtagaggaggtggtggttggaataataga
agtggtgggcgggaccgcgggagggagcgtgaggtgaatccgtttggtgatgatggtgat
gtagagccggcttttggtgaacaagagaatacgggaattaactttgacgcgtatgaggat
attccggtggagacgagtgggcacaatgtgccaccgcctgtgaatacatttgcggatata
gacttgggtgaggcagtgaatcagaatattcggaggtgtaagtatgtgaaaccgactcca
gttcagcgtaatgctatcccaatattgcttgctgggagggacttgatggcttgtgctcag
acgggttcagggaagacagctgccttttgctttccaattattgctggaattatgcgggag
cagtatgtacagagaccgcatggagggaggacaatgtaccctctggctcttattctttct
cctactagggagctttcgagtcagatacatgatgaagccaaaaagttttcctatcaaact
ggtgtcaaggtggtggttgtttatggaggcgcaccaatcaaccaacagctccgagaactt
gagagaggggttgatattcttgtggccactcctggacggttagtggatttgcttgagagg
gccagagtatcattgcagatgattagatatttggctcttgatgaggcagacaggatgctg
gatatggggtttgagcctcagattagaaagatagtggaacaaatggacatgcccccatgt
ggcatgaggcagacaatgctgttcagtgccacctttcctaaagaaatacagagacttgca
tctgattttctttcaaattacatatttttggctgttggaagggttggatcaagtactgat
ttaattgttcaaagagttgaatatgttcaagagattgataagagaagtcatctcatggac
cttcttcatgctcaaagagaaactgaagttaatagcaagcattctctgacattagttttt
gtggagacaaagaagggagccgactcactggaacatttgttacatgtcaatggatttctt
gctacatcaattcatggtgatagaacacaacaggaaagagaaatggcacttagatcattc
aagagtgggaagacgccaattctagtagcgacagatgtggcagcacggggtcttgatata
ccccatgtggctcatgtggtgaattttgatcttccaaatgacattgatgattatgttcac
aggataggacgaacaggacgagctggaaatacagggctggctactgccttctttaacgaa
aataatatgtcattagcaagacctttagctgatctaatgcaagaagcaaatcaagtagta
cctgcgtggctcactcgttatgcttcacgggttttgcatagtggtggcaagaatcggcgc
tctgcaggagcccgttttggtggtcgtgatttcagaagagagggttctattaacaagggt
acagaatattatggagggaacagtaacagtggatatggggttcctgctggttatggtggg
ggttacaatccagcggtggccagtgcttgggattag
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