Populus nigra (Lombardy poplar): 133677589
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Entry
133677589 CDS
T10372
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133677589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133677589
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
133677589
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
133677589
NCBI-ProteinID:
XP_061955655
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All DBs
Position
17:complement(13388674..13392897)
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AA seq
538 aa
AA seq
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MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVTRLIREYN
VRASTSSDKNYFIGRFVTGLPGFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWQL
EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKM
KNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDR
GEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGKANGLNESDVED
DDDDEDMDDDISPVLAPKQKDVVPKEEAADNSPAKPTPSGSAKGTPSTSKSAKGKRKLNG
EDAKSSNGAPVKKVKTENEVKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPVTEE
EIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNYVVLRDK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatcttctgttaaagccgtcgtgtagcggctgcggcagcaccacagatttg
tacggaagcaattgtaagcacatgacgctttgcttgaattgcggaaaaacaatggcggag
aatcgcggcaaatgcttcgattgtggcactactgtcactcgcttgattcgagagtataat
gttagggcgagtacgagtagcgacaagaattattttataggaagattcgtgacaggattg
ccaggtttttccaagaaaaaaaatgcggaaaataaatggtctttgcacaaagaaggaatc
cttggtcgtcagattactgatgctttgagggagaagtttaagaataagccttggcaattg
gaggatgagactgggcagtctcagtatcagggtcatcttgaagggtcgcaatcggcgact
tattatctgttgatgatgactgggaaagagtttgttgctattcctgctggttcatggtac
aactttaacaaggtagcgcattataagcaacttacgttggaggaagcagaggagaagatg
aagaataggaggaagactgcggatgggtatgaaaggtggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaggtggagaaggtagatgataaggagggtgtttcagctggc
gggagaggtgggcgtcggaaagcaagtggtgatgatgatgagggaaatgtgtctgacagg
ggtgaggaagatgaggaggaggaggcaggaaggaagagtagactcggactcaataaacag
ggtggtgatgatgatgaagaaggtccaagaggaggtgatcttgatatggatgatgatgat
attgagaagggtgatgattgggagcatgaagaaattttcaccgatgatgatgaagctgtt
gccattgatcctgaggaacgggaggatttggccccagaagttcctgctcctcctgaaatc
aagcaggatgaagatgatgaggatgaggagaatgaggagggaggactgagtaaatctggg
aaagagttgaagaagctactagggaaagcaaatggtctaaacgagtcagatgtagaagat
gacgacgacgacgaggatatggatgatgatatttctcctgtactggctccaaagcagaag
gatgttgtgccgaaggaggaagctgctgacaatagtcctgcaaaaccaacaccttcaggt
tctgctaagggaaccccttctacctccaagtctgccaaggggaaaagaaaattgaatggt
gaagatgcaaaatcttctaatggtgcacctgtgaagaaggtgaagacagaaaatgaagta
aaacctgccgtgaaagaagaaagctcgcctgctactaaaggtactgcaactcctaaagta
acaccgccatcatcaaaaacggggtcaacatcaggttctactggtcctgtcactgaagaa
gagatcagggctgttctgttgcaaaatgggcctgttaccacacaggatctggttgctagg
tttaaatcacgactaaggactcctgaggacaagaaagcttttgcagatattctgaggaga
atttctaagattcaaaagaccagtggatctaactatgttgtgctgagggacaaatga
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