Populus nigra (Lombardy poplar): 133677702
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Entry
133677702 CDS
T10372
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
Brite
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
133677702
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
HECT type E3
133677702
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133677702
NCBI-ProteinID:
XP_061955817
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Position
17:complement(7590056..7598839)
Genome browser
AA seq
1569 aa
AA seq
DB search
MGNRGQKRAEMVDELPADKRACSSLEFRPSSSNSLIQTQINTETHNAEIHDADMDTSSSG
SVSSHSDEEEPEMDSAHGSCDSEGPRHSSLREYQRQRSSGDHSRLKSCLFNLSERTEPSG
QLAALTELCKVLSFCTEDSLSSTMADLLSPVLVRLSRHDSNPDIMLLAIRALTYLCDVFP
RASVFLVRHEAIPAICQRLMAVEYLDVAEQCLQALEKITRDQPLPCLQAGAIMAVLCFID
FFSTSVQRVALSTVVNMCKKLPSENFSLFMEAVPILCNLLQYEDRQLVENVAICLIKIAE
RVSQSSEMLDELCKHGLINQATHLVQLNSRTTLSQPVYNGLIGLLVKLSSGSIVAFRTLY
ELNISSILKDLLATYDLSHGMSSPHVIDGQGNQVHEVLKLLNELLPTVARNQDAQQLVLD
KEAFLANHPDLLHKFGLDIIPSLIQVVNSGANLYVCYGCLYVINKLVYLSKSDMLLELLT
NTNFSSFLAGALTRKDHHVLMLALQITETILQKLPDVFVNSFIKEGVFFAIDGLLVPEKW
SQLIFPACNGIYLPLNSNQKSSSKVVMRCLCYVFDTGQSLSASETGTCKLEKDTVENLAK
HIRISYFALESCDSEKGLTDILQKLRALSAELSDLMNMSVKIGSCTQDEEKCYXILCRIM
EKLDGREPVSNFEFIESGIVKILVNYLFNGKYLREKVEPQSTFDDFYVVEKRFEVFARLL
SSSDLSEESPLSALIQKLLGALSSLENFPVILSHASKYRSSFAIIPNGCCMSYPCLRVRF
VRGEGETCLCNYSEDPVTVDPLSSVNTIEGFLSPKVRIKGTEQIESAAQALEPAENVQFK
SPSTANPSEGESSGLVEPDSMAFDLLVMQDNEANLSQPPPELDVNLIQRNPDETLSNDTH
IVSVEDIVQSPSCADDSTKSHCPTSCSNGDAMPKLVFYLEGQQLDRTLTLYQAILQQKVK
ADHEINSTAKLWTQVHTLTYRIAVDTRDDNTQDCPSMAQNSSILDQAVAFMQHPAFFSSM
FNCELPSDLDKSSPTNDILFLLKSLEGLNRFIFHLMSHERIHAFAEGLIDNLDNLRVAAR
PVAQNEFVSSKLTEKLERQMRDSLAVSIGGMPVWCNQLMNSCSFLFSFETRCKYFRLSAF
GCQQIQIQPSSHNNSGVSRDRLPSAGSLSRKKFIVLRDQVLESAAQMMDRYAHVKAPIEV
VYNEEVGTGLGPTLEFYALVSKEFQKSGIGMWREDHISFPTIESLQAEYSGIVKSPFGLF
PRPWSPTVDASDGVQFSEVIKKFFLLGQIVAKALQDGRVLDLPFAKVFYKLILQQELNLY
DIQSFDPELGRTLLEFQALVNRKKNMGLVIVENSSSTQDACFWNTRIEDLCLDFTLPGYA
DYILSFDEDHKIVNMDNLEVYVSHIVDATIHTGISRQVEAFKSGFNQVFPIKHLMIFTEE
ELERLLCGECDFLAFNELLDHIKFDHGYTASSPPIVNLLEIIKEFEYEQRRSFLQFVTGA
PRLPTGGLASLNPKLTIVRKHCSNCEDVDLPSVMTCANYLKLPPYSSKDKMKEKLLYAIT
EGQGSFHLS
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcgtggacaaaaacgagcagagatggttgatgaactgccggctgataagaga
gcctgtagttcattggagtttagaccaagttcatccaactcgttaattcaaactcaaata
aatactgagacacataatgctgaaattcatgatgctgacatggatacttcatcatctggt
tcggtatcaagccattctgatgaggaagaacctgagatggattcagctcatggctcttgt
gattctgagggtccaagacatagcagtctgcgtgagtatcagaggcagagatcctctggt
gaccatagtagattgaagagttgtttatttaatttaagtgaaaggacggagccttctgga
cagttagctgctctaacagagttatgtaaagtgctttcgttttgtacggaggattcactt
tctagtacaatggcagacctgttatctccagtacttgttaggctttcaaggcatgacagt
aacccagatataatgctgttggcaataagggctttaacttatctgtgtgatgtgtttccc
cgagcatctgtttttcttgttaggcatgaagctattcccgctatttgtcaaagattaatg
gccgttgaatacttggatgtagctgaacagtgtttgcaagcgttggagaaaataactcgt
gatcaaccacttccatgcttacaagctggggctatcatggcagttctatgttttatagac
ttcttctctacaagcgtacaaagagttgcactttcaactgtggtgaacatgtgcaagaaa
ctgccatcagaaaatttttcacttttcatggaggctgttccgatattatgtaatcttcta
caatatgaggatcgacagcttgttgaaaatgttgctatttgcttgatcaaaatagcagaa
cgagtcagtcagtcatctgagatgctggatgaactatgcaagcatggactaattaatcaa
gctactcatctagtgcaattgaacagccgaacaactctatctcagccagtatacaatggt
ttgattgggcttcttgtcaaactttcttctggttcgattgtcgctttcaggaccctgtat
gagctcaatataagcagcattttgaaggacttacttgccacttatgacctctctcatgga
atgtcttctcctcatgtgattgatgggcagggcaaccaggtacatgaagtgctcaagttg
ctaaatgagcttctccctactgtagcaagaaatcaagatgctcaacaacttgtgttggat
aaagaggcatttttggctaatcaccctgatctcttgcacaagtttggattggatataatt
ccttccttgattcaggtggttaattctggtgcaaatctatatgtttgctatggctgctta
tatgtcatcaacaagttagtttatctcagcaaatctgacatgcttctggaattgcttacg
aatacaaatttttcaagcttcttggctggagctcttactcgtaaagatcaccatgtgctg
atgttagccctgcaaattaccgagacaattctccaaaagcttccagatgtttttgtaaac
tctttcatcaaggaaggtgtcttttttgccattgatggccttcttgtgcctgaaaaatgg
tcgcaattgatcttcccggcgtgcaatggaatctatctgccactcaattcaaatcaaaag
tcttcttcaaaagtagtcatgagatgtttatgttatgtttttgatactggacagtctctt
tcagcctcggagacgggaacatgcaagcttgaaaaagacactgtagaaaatcttgcaaag
catataagaattagttactttgctttagaatcatgtgactctgagaaaggattgacagat
atccttcaaaagctcagagctctttctgctgaattgagtgatttgatgaatatgtctgtc
aaaattggttcttgcacccaggatgaagagaaatgttacnttatattgtgtcgaatcatg
gaaaaacttgatggaagagaacctgtgtctaattttgaatttattgaaagtgggattgtg
aagatattagtgaattacttattcaatggaaaatatctgagagaaaaggtggagcctcaa
agtacatttgatgatttctatgttgtagagaaaagatttgaggtatttgcaaggctatta
tcttcttcagacctatccgaagagtctcctttatcagcattaatacagaaattgctgggt
gcgttatcttctttggaaaatttccctgttattctgagccatgcatcaaagtacagatcc
tcatttgcaatcatccctaatggatgttgcatgtcttatccatgcctaagagttcgtttt
gtcaggggagagggcgaaacatgcctttgcaactattctgaagatcctgtgacagtagat
cctctttcttctgtgaatacaattgaaggatttctatctcctaaagttagaataaaagga
actgaacaaatagaatcggctgctcaagctctggagccagcagaaaatgtacagttcaaa
tcaccatcaactgcaaaccccagtgaaggggaaagttcaggacttgtggagcctgatagc
atggcttttgatttactagtaatgcaggacaatgaagctaacctatcacagcctccacca
gaactagatgtaaatttgatacagagaaatcctgatgaaacattatcaaatgatactcat
attgtctcagtggaggatatagtgcagtctccttcatgtgctgatgactctacgaaaagt
cattgtcctacatcctgtagcaatggagatgctatgccaaaactggtattttacctagaa
ggacagcagctggatcgaactttgactctttaccaggcaatactccagcaaaaagttaaa
gcagaccatgaaattaacagcacagcaaagctgtggactcaagtacacaccttgacttac
agaatagctgtggacactagggatgataatactcaagattgccctagtatggctcaaaat
tcctcaatattagatcaagctgtggcttttatgcagcatcctgcatttttctccagcatg
tttaattgtgaactcccttctgacctggataagtctagtcccactaatgatatattgttt
ctgcttaaaagtttagaaggtttgaacaggtttatttttcatctgatgtctcatgaaaga
atccatgcatttgctgaagggctgatagataatttggataatttaagggttgcagctcgc
ccagtagcacagaatgagtttgtgagcagtaagttgacagagaaattggagcgacagatg
cgggattctctggctgtgtccatcggtggcatgcctgtgtggtgcaatcagctcatgaat
tcatgctcctttttgtttagctttgagactagatgtaaatatttccggctgtcagcattt
ggctgtcagcaaattcagatacagccttcatcacataataattcaggtgtctcgagagac
aggctaccaagtgctggcagtttgtcccgtaagaaattcatagttttacgtgaccaagtt
ctggagtctgctgctcagatgatggaccgttatgcccatgttaaagcacctattgaagtg
gtatataatgaagaagttggtactggtcttggtccgaccttggaattttatgctctggtt
agtaaagagtttcagaagtctggcattggcatgtggagggaggatcatatttcatttccc
accatcgagagcttgcaggcagaatactctggaattgtgaagtctccatttggacttttt
cctcgcccatggtcacctacagtggatgcatctgatggagtacagttttctgaggttatt
aaaaagtttttccttctgggacaaattgtagccaaggctcttcaagatggcagggtgctg
gatctaccattcgccaaagtcttctataaacttattcttcagcaggaacttaatttgtat
gacatccagtcctttgatcctgagcttggtaggactttgctagagttccaggctcttgtc
aacaggaaaaaaaatatgggattagtcattgtagaaaactcatcttctactcaagatgca
tgcttttggaacactagaatcgaggatctctgtcttgactttactcttcctggatatgct
gattacattcttagttttgatgaagatcacaaaattgtgaatatggataacttggaggtg
tatgtttctcacattgtggatgctactatacacacaggaatttccagacaagttgaagca
ttcaagtctggatttaaccaggtttttccaattaaacatcttatgatttttactgaggag
gaacttgagcgtttgctatgtggagaatgtgattttttggctttcaatgagcttttggat
catatcaagtttgatcatggatacactgctagcagtcctcctattgttaatttactggaa
atcataaaagaatttgaatatgaacaacgacgatcatttctacagtttgtaactggggca
cctcggctacctacaggaggcttggcgtctctgaatccaaaattgaccattgtacggaag
cattgcagcaactgtgaagatgtggaccttcccagtgtgatgacttgtgccaattatctg
aagttgcctccctactcgtcgaaagataagatgaaggagaaacttctgtatgccataaca
gagggtcaaggctcattccacctctcgtag
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integrated database retrieval system
