Populus nigra (Lombardy poplar): 133677893
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Entry
133677893 CDS
T10372
Name
(RefSeq) histone deacetylase 6-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
pnz03083
Polycomb repressive complex
Brite
Enzymes [BR:
pnz01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133677893
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
133677893
HDAC complexes
Sin3A-HDAC complex
133677893
BRAF-HDAC complex
133677893
REST complex
133677893
SHIP complex
133677893
MiDAC complex
133677893
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
133677893
Heterochromatin formation proteins
Other heterochromatin formation proteins
133677893
Chromatin remodeling factors
NuRD complex
133677893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133677893
NCBI-ProteinID:
XP_061956012
LinkDB
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Position
18:complement(9741307..9745329)
Genome browser
AA seq
440 aa
AA seq
DB search
MLDTNGGASLPSTGTDAEKRRVSYFYEPTIGEYYYGQGHSMKPHRIRMAHNLIINYALHR
RMEINRPFPAGPEDIGWFHSDDYVEFLSSVSPQSASDPAHGRQLKRFNIGDDCPVFYGLF
EFCQASAGGSIGCAVKLNRGDADIALNWAGGLHHAKRSEASGFCYVNDIVLGILELLKVH
KRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGHIKDIGVGKGKNYALNIP
LKGGMDDGCFRALFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
IRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPEYTLHADP
SNMENLNTPKDMERIRNILLEQLSRLPNAPSVPFQTTPATTEVPEEDEENMDQRPKRHVW
NGVDYESDHDEDEKPEPGFF
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgctggatactaatggaggcgcatccctaccatcaacaggaacagacgcagaaaaacgc
cgagtcagctacttctacgaacccacaatcggtgagtactactacggtcaaggccactca
atgaaaccccacagaatccgaatggcccacaacttgataatcaactacgctctccaccgt
cggatggaaatcaaccgtccattcccagcaggtcctgaagacatagggtggttccattct
gatgattacgtggaattcttgtcttcagtgtcaccacaatcagcgagtgatccggcacat
gggaggcagttgaagaggtttaatattggtgatgattgtccggttttttatgggttattt
gagttttgtcaggcctctgctggtggctcaattggctgtgctgttaagcttaatagaggg
gatgctgatattgctttgaattgggctggtggcttacatcatgcgaagaggagtgaggct
tctgggttttgttatgttaatgatattgttcttggcattcttgagttgctcaaagttcat
aagcgtgtattgtatgtagatattgatgtccaccatggtgatggtgttgaggaagcattc
tatactactgacagggttatgaccgtgtccttccataaatatggagatttctttccaggg
acggggcacatcaaggacattggagttgggaaagggaagaactatgccctgaatattcct
ttaaaaggtgggatggatgacggatgtttccgtgctctgtttcggccactcatccaaaaa
gtgatggaggtttatcaacctgatgcagttgttctccaatgtggagcagattcattatct
ggtgataggttggggtgtttcaacctgtctgttaagggccatgcagactgccttagattt
attagatcttttaatgttcctctgatggtcttgggtgggggtgggtatactatcaggaat
gttgcccgttgctggtgctatgagactgcagttgcagttggggtggaaccagataacaaa
ttgccttacaatgagtactacgagtactttggccctgaatacacacttcatgctgaccca
tccaatatggagaacctaaacacacccaaagacatggagagaataaggaacatactgcta
gagcaactttctagactgcctaatgctcccagtgtaccttttcagacaacaccagctaca
actgaagttccggaagaggatgaagagaacatggatcaaagaccaaagcgtcacgtatgg
aatggtgttgattatgagtctgatcatgatgaagatgagaaaccggaacctggatttttc
tga
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