Populus nigra (Lombardy poplar): 133677916
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Entry
133677916 CDS
T10372
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
pnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133677916
09124 Replication and repair
03420 Nucleotide excision repair
133677916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133677916
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133677916
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
133677916
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133677916
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133677916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
ATPase_2
Motif
Other DBs
NCBI-GeneID:
133677916
NCBI-ProteinID:
XP_061956041
LinkDB
All DBs
Position
1:41785406..41792016
Genome browser
AA seq
769 aa
AA seq
DB search
MGHGDKSGRPNKKFKFTTKDDYRSSVGEDDAFYPEEAGDDFRDGETEGKKRDFSKLELKP
DHANRPLWACADGRIFLETFSSLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
GLETETIISVLNKLSKTKLPKEMIDFIHGSTANYGKVKLVLKKNRYFIESPFTEVLKKLL
KDEVIAKARIQPESSHGTEGFTISKAAGEIGTSHDGLLNEAELAAAAEEKETHSFEVDPS
QVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRA
RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFSLWSDISQDQICRFT
SDSKERFKGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR
KVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEEQRRDKIIVFADNLFALTE
YAMKLHKPMIYGATSHAERTKILHAFKTSSEVNTVFLSKVGDNSIDIPEANVIIQISSHA
GSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
YSFKVITSLPPADSGADLSYNSLEDQLGLLGKVLSAGDDAVGLEQLDEDADDIALHKARR
YMGSMSAMSGANGMVYMEYSTGQKGGKGQIKGKPKDPSKRHYLFKRRFG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgataaaagtggtcgaccaaataagaaattcaaattcacaacaaaggat
gattatagaagctcagtgggtgaagatgatgctttttaccctgaagaagctggggatgac
tttcgcgatggcgagacagaaggaaaaaagagggattttagcaaattggaattgaagccc
gatcacgcgaatcgcccattatgggcttgtgcagatgggcgaattttccttgagactttc
tcttctttgtataagcaagcttatgattttctcattgccattgctgagcctgtttgcagg
cccgagtcaatgcacgagtataatttgactccacattccttgtatgctgcggtgtcggtg
ggtttagagactgaaacaataatttcagttttgaataagctgtcgaagaccaagttgccg
aaagagatgattgattttatacatggttctaccgctaattacggtaaagtaaagctcgtg
cttaagaagaatcggtacttcattgaatccccatttaccgaggtattaaagaagttgctc
aaggatgaagttatagctaaagcaaggattcaacccgagagttcacatggaactgaggga
tttacaattagcaaagctgcgggggaaattggaactagtcatgatggattattgaatgaa
gcagaattggctgctgcagcagaagaaaaagaaactcactcatttgaagttgacccttca
caggttgaaaatgttaagcagcggtgcttgccaaatgctttaaattatccaatgttggag
gagtatgatttcagaaatgacactgtcaatcctgacctgaatatggaattaaagcctcac
gcacaaccacgaccatatcaagagaaaagcctcagtaaaatgtttggaaatggcagagca
agatctggcattattgttcttccatgtggagctggaaagtctctagttggtgtttctgca
gcttgtcgaataaagaaaagttgcctctgtttagcaacaaatgctgtttctgttgatcaa
tgggcctttcaattctcgctctggtcagacatttcacaggatcaaatttgtcgttttaca
tctgacagcaaagaacgattcaagggaaatgctggggttgtggtgacaacatataacatg
gttgcttttggtggaaaacgatcagaagaatctgaaaagattattgaagaaataagaaat
agggagtggggacttcttctaatggatgaggtccatgtcgttcctgctcatatgtttcgt
aaagttatcagcatcactaaatctcattgcaaacttgggcttactgcaacacttgtgaga
gaggatgaaaggattaccgatctgaacttccttattggtcctaaactatatgaagcaaac
tggttggatctagtaaaagggggtttcattgcaaatgtgcagtgtgctgaagtatggtgc
ccaatgacgaaagagtttttcgctgagtatctaaagaaagaaaattcaaagaagaagcag
gcactttatgtgatgaatcctaacaaattcagggcatgcgaatttcttataagatttcat
gaagagcagcgtcgtgataagataattgtgtttgctgataatctttttgcactcacagag
tatgcaatgaaacttcacaagcctatgatctatggtgcaaccagtcatgctgagaggaca
aaaattctccatgcgttcaaaactagtagtgaagtaaatactgtcttcttgtctaaggtt
ggtgataactcgatagatattcccgaggcaaatgtgataatccagatatcatcacatgct
ggttcaagacgacaagaagctcaacgattgggtcgtattctgagagcaaagggtaaactt
caagatagaatggcaggaggcaaagaagagtataatgctttcttctattctcttgtatct
actgatacacaggagatgtactattcaaccaaaagacaacagtttctgattgatcaaggt
tatagctttaaggtgataacaagcttgcctccagctgattcaggagctgatttgagctat
aacagtcttgaggatcaattgggacttcttgggaaggttttgagtgctggagatgatgct
gttggtttagaacagctagacgaggatgcagatgacatagctcttcacaaagcccgtcgc
tatatgggatccatgagtgccatgtcaggtgcaaacgggatggtctatatggaatacagt
actgggcagaaaggtgggaagggccagataaagggtaagcccaaggacccatccaagcgg
cattatttgttcaaaaggcgctttggctga
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integrated database retrieval system
