KEGG   Populus nigra (Lombardy poplar): 133678247
Entry
133678247         CDS       T10372                                 
Name
(RefSeq) WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz04120  Ubiquitin mediated proteolysis
pnz04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    133678247
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    133678247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pnz04121]
    133678247
Enzymes [BR:pnz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133678247
Ubiquitin system [BR:pnz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133678247
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133678247
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_EML Beta-prop_DCAF4 EIF3I Beta-prop_TEP1_C Beta-prop_DCAF12 WD40_like Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP WD40_RFWD3 YNR034W-A-like MC5
Other DBs
NCBI-GeneID: 133678247
NCBI-ProteinID: XP_061956494
LinkDB
Position
18:13732692..13734552
AA seq 391 aa
MKNLSTKFHPHSHHHTQESQNQEKEAIGEEQEQQQEKARCEWDFSLTTIVSSGNNNITSS
TPAISDALGVIEFDQTSSIIATGGIARKIRIYNFKSLFAHENTSQNAHEIICLDHARACD
YYICTPAKLSSIRWKPRSDGRVLGSGDYDGVVMEYNLERRIPIFERDEHGGRRVWSVDYS
HWDPVLGASGSDDGTMQMWDTRCESGEGVATVQPGVGRSAVCCVEFNPFGGPIVAVGCAD
RRVYGYDIRMTVDPVFVLDGHRKTVTYIKFLDNVTLVSASIDGCLKLWDSDNSSVIRSYK
GHVNSRSFIGLSVWRNGGLLGCGSENNKVFVYDRRWGEPIWVHESNPVGRDGCGGGFVSS
VCWRQVEEDQCTLVAGGSDGDLQVFQGRRKS
NT seq 1176 nt   +upstreamnt  +downstreamnt
atgaaaaacctctccactaaattccatccgcatagtcaccaccacacacaagaatctcaa
aaccaagaaaaagaagccataggggaagaacaagaacaacaacaagaaaaagctaggtgt
gaatgggatttcagtctcacaacaattgtttcatccggcaacaacaacatcactagtagt
actccagccatatcggatgctctaggggtgatcgaattcgaccagacgagcagcatcatt
gccacaggtggaatagcaagaaagataagaatttacaacttcaagtctttgtttgcacat
gaaaatactagccaaaatgcgcacgaaattatttgcttagaccatgctagggcttgtgac
tattatatttgtaccccagctaagcttagtagcatccgatggaaacccaggtcggacggg
cgggttctagggtctggagactacgacggggtggtgatggaatataatcttgagaggaga
ataccaatcttcgaacgagatgaacatggcgggcgaagggtttggagtgtggactactca
cattgggatccggttttgggtgcatccgggtcggatgatggaaccatgcaaatgtgggac
acacgttgcgagagtggggaaggcgtggctactgttcagcctggtgtgggtcgcagtgcc
gtgtgttgcgtggagttcaatccatttggtggaccaatagtagccgtcggatgcgctgac
agaagggtatacgggtacgacattcgaatgacggttgacccggtatttgttcttgatggg
cataggaagaccgtgacgtacattaaatttctcgataatgttacattggtgtctgctagc
attgatggatgcttgaagctatgggattcggataattcaagcgtaatccggtcatacaag
gggcacgtcaacagccggagcttcatcggattgtcagtgtggaggaatggaggcttatta
gggtgtgggtcagaaaacaataaggtttttgtgtatgacagaagatggggcgagccaata
tgggttcacgagtctaacccagtgggtagggatgggtgtggcggcgggttcgttagcagt
gtgtgctggaggcaagtggaggaagaccagtgcacgctcgtggcaggaggatcagatggg
gacttgcaagtttttcaaggcagaaggaagtcatag

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