Populus nigra (Lombardy poplar): 133678491
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Entry
133678491 CDS
T10372
Name
(RefSeq) autophagy-related protein 13a-like
KO
K08331
autophagy-related protein 13
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
133678491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133678491
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133678491
Membrane trafficking [BR:
pnz04131
]
Autophagy
Autophagosome formation proteins
ULK complex
133678491
Atg1 complex
133678491
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
133678491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
133678491
NCBI-ProteinID:
XP_061956778
LinkDB
All DBs
Position
18:complement(25447..29690)
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AA seq
619 aa
AA seq
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MDMHGNSHPDSGKLEQIISQFLLKSLHIILDSRIPSLHPHDRSRELSSTSRVKKSDKWFN
LVLGDRPAALDNLNFWHRNLTDPMIIDVLLVRQPSTPSTSMDNLYAGTSVETVIERWVVQ
YESLRVMPPQTGENSASYKKTYKKSIILLRSLYSHMRLLPAYRVFRQLSSSTQTYNFHII
YKVSSFCEPFSRADEEVMKELSFVPVEALPGRLCVSVTYRSTLSDFKLEPVTPMTPKIIM
DYVGSPTTDPLRSLPSSEKGVGATSFLLRGMQPHVSSPFPRPHSWTSGFHRAAHMVNQPV
GGSPPAYRTSRMPCDFPSPSNDIYGHRVQNYRPSTPQKANYHDEYQLSPPFSSSMSPSTP
THFYNGSPVLARDTSETAPVSIPLPISGGRSSRYLSPNFSDSSRHSLPPLSPRSTRHDSS
SQESPSGIRSIKKLEAIRFAELNSGNVNHYSGQKLLKDSKDDSGRFSGLLSSSGSPRVGF
SRSSSRLSFQDDLDDDDDFSCPFDVDDVDTSDSHASQNLYGKKNLESSSHTASIGKKSQD
AAVGILVHMLRTAPPLRQDPSCYSSHSLRTNVEEGMSTASGFFLPRKTADALEELRSYRE
MKDLLLSKSGTRVVSKEEA
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcatggtaattctcaccctgattctggaaaactagaacaaattatttcccag
tttctattgaagagcttgcacatcatcttggactcaagaatcccttctcttcatccccat
gatcgcagcagggaactttcttccacttctcgtgtcaaaaagagcgacaaatggttcaat
ttagttctcggagaccgccctgctgctctcgataacttgaatttttggcacagaaatctc
acggatcccatgataattgatgtactacttgttcgccaaccgtctactccgtctacatcc
atggacaatttgtatgctgggacatctgtggagacagttatagagaggtgggttgttcag
tatgagtccctgcgggttatgcctccccagaccggtgaaaattctgcctcttacaagaag
acatataagaagtccatcatacttttacgctctctttactctcatatgaggcttctcccc
gcatacagggtctttcgccagctaagctcatctactcaaacttacaatttccatatcatt
tacaaagtttcttcattttgcgaaccgttctccagggctgatgaggaagtaatgaaggag
ctcagttttgtccccgttgaggcccttcctggccgcctttgtgtatctgtgacctatcgt
tcgacactatctgatttcaagcttgagcccgtgacaccgatgacaccaaagattataatg
gactatgtcggtagccctaccacagatcctcttaggtctttaccctcttcagagaagggc
gtgggtgctacgtcctttctattgagaggaatgcaaccacatgtttcttctccttttcca
cgcccgcatagctggacaagcggcttccatagagcagctcatatggtgaaccaaccagtt
ggtggatctccgccagcttatcgcacatctcgcatgccatgtgattttccgtccccctct
aatgatatttacggtcatagagtccaaaactacagaccatcaactcctcaaaaggccaat
tatcatgatgagtaccagctttctcctccattctcatcatctatgtccccttctacgcca
acgcacttctacaacggtagtcctgtcctagctcgtgatacttcagaaactgcacccgtt
tctattccacttcctatatcaggcggcagaagttcgagatacctttctcctaacttttct
gattcaagtaggcattctcttccacctttatctcccagaagcacaaggcatgattcatca
tcacaggagtctccttctggaattcgatcaatcaagaaattagaagctataaggtttgca
gagttaaactctggcaatgtaaatcattattctggtcagaagttgttaaaagatagcaaa
gatgattcagggcggttctcagggttgttatcttccagtggctctccacgcgttggtttt
tccagaagttcaagtagattatctttccaagatgacttagatgatgatgatgatttctcg
tgtccttttgatgttgatgatgttgatacatcagattctcatgccagtcagaacctttat
gggaagaaaaacttggagtccagttcccacactgcatcaatagggaaaaaatctcaagat
gcagccgttggtatccttgttcacatgctgaggacagcacctccgctgcgtcaagatcca
agctgttactcatcccactccttgaggactaatgtagaggaagggatgagcacagcttct
gggttttttttgccgagaaagacagcagatgcgctggaagagctccggagttacagagaa
atgaaagacctcttgctctctaagagtggaactcgggtggtcagcaaagaagaagcataa
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