KEGG   Populus nigra (Lombardy poplar): 133678516
Entry
133678516         CDS       T10372                                 
Name
(RefSeq) coatomer subunit alpha-1-like
  KO
K05236  coatomer subunit alpha
Organism
pnz  Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pnz04131]
    133678516
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pnz04147]
    133678516
Membrane trafficking [BR:pnz04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    133678516
Exosome [BR:pnz04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   133678516
  Exosomal proteins of bladder cancer cells
   133678516
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta TPR_COPA_B Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP ANAPC4_WD40 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_At4g14310 ENTH Aa-Ago_N
Other DBs
NCBI-GeneID: 133678516
NCBI-ProteinID: XP_061956814
LinkDB
Position
18:8666163..8671462
AA seq 1220 aa
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYTKDRFLRFFEFSTQRDTQVIPIRRPG
TTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIARGDAVPEAKRGAGGSAVF
VARNRFAVLDKSSNQVLVKNLKNEVVKKSGLPISCDAIFYAGTGNLLCRAEDRVVIFDLQ
QRLVLGELQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKISGNTIFYLDRDGKNKAIAIDATEYI
FKLSLLKKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLEKLSK
MLRIAEVKNDVMGQFHNALYLGDVRERVKILENAGHLPLAYAAAKVHGLEDVVERLAAEL
GDDIPSFPKGKEPSLLMPPAPIMCGGDWPLLRVMKGIFEGGLDNMVRGGADEDEEEAADG
DWGEELDMVDAVGLQNGDVTAILEDGEAAEENEEEEGGWDLEDLELPPEADTPRASVSAR
SSVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFVPLKPMFLDLH
SGSHTYLRAFSSTPVISLAVERGWNKSASPNVRGPPALVFNFSQLEEKLKAGYKATTAGK
FTEALKLFLNILHTIPLIVVDSRREVDEVKELIIIVKEYVLGLQMELKRREMKDNPVRQQ
ELAAYFTHCNLQAPHLRLALQNAMTVCFKNKNLATAANFARRLLETNPPNENQARSARQV
LAASERNMTDAAQLNYDFRNPFVVCGATYVPIYRGQKDVSCSYCGSRFVPSNEGQLCTVC
DLAVVGADASGLLCSPSQIR
NT seq 3663 nt   +upstreamnt  +downstreamnt
atgttgaccaagtttgagaccaagagtaatagagtgaaggggctgagtttccacagtaag
agaccatggatccttgctagtctccacagtggtgtgatccagctatgggactatcgtatg
ggcactctcatcgatcgctttgatgagcatgatggccctgttcgtggtgttcatttccat
aaatctcaacctctttttgtctctggaggtgatgattacaagattaaagtctggaactac
aaattgcataggtgtctgtttacacttcttggacatcttgattacattcgtaccgtgcag
tttcatcatgaatacccatggatcgtgagtgccagtgatgatcagaccatccgcatttgg
aactggcagtctcgtacttgcatttctgtgttgacaggacacaatcattatgtgatgtgt
gcctcattccaccctaaagaagaccttgttgtttctgcatctctggatcagactgttcgt
gtttgggatattggtgctttgagaaaaaagacggtgtcccctgctgatgacatcatgagg
cttacacagatgaacactgatctttttggtggtgttgatgctgttgttaagtatgttttg
gagggccatgacagaggagtcaactgggctgcattccacccaacactacctttgattgtc
tcaggagcagatgatcgccaagtaaagttgtggcgcatgaatgacacaaaggcctgggaa
gtggacacgttaagaggacacatgaacaatgtgtcatgtgttatgttccatgccaagcag
gatataattgtatcaaattcagaggataaaagcattcgtgtctgggatgtaactaaacga
actggtgttcaaactttccgtcgagaacatgatcgattctggatccttgcatctcatcct
gagatgaatcttctggctgcaggtcatgacagtggcatgattgtctttaagttagagaga
gaaaggcctgcttttgctttaagtggtgattctttgttctatactaaagatcgcttttta
cggttttttgagttttcaactcaaagagatacacaagtaattcccatccgacgacctggc
accacaagcctgaatcaaagtccaagaactctttcatacagtcctacagaaaatgctgtt
cttatctgctcggatgtggatggaggatcttatgagttatatgtcattcctaaagacagc
attgctaggggtgatgctgtgccagaggcaaagagaggtgctggtggatctgctgtcttt
gtggctcggaataggtttgctgtgcttgataagagcagcaatcaagtcctagttaagaac
ctcaagaatgaagttgtcaaaaagagtggtcttcctatcagttgtgatgctatattctat
gctgggacaggtaacttgctttgcagggcagaggatagggtggtcatatttgatctccag
cagaggcttgttcttggggagttgcagacaccttttgtcaagtatgttgtttggtccaat
gacatggaaagtgttgccttgctaagcaaacatgccatcatcattgctagcaagaagctt
gtccaccaatgcaccctccatgaaacaatccgtgtaaagagtggagcttgggatgataat
ggtgttttcatttacacaactttaaatcatatcaaatactgcctgcctaatggagatagt
ggtataattagaacccttgatgtcccaatatatatcactaagatttctggaaatactatc
ttttacttagatcgggatgggaagaataaggctattgctattgatgctacagaatacatc
tttaaattgtctctgctgaagaagagatatgatcatgttatgagcatgataaggaactca
cagctttgtggtcaggcaatgattgcttatttgcaacagaaggggttcccagaagtcgct
ctgcattttgtgaaagatgagagaactaggtttaatttggctttagagagtggaaatatt
cagattgctgtggcttcagcaaaggaaattgatgagaaagaccactggtataggttgggg
gttgaagctcttcgccaagggaatgcaggtatagttgaatatgcctaccagaggacaaaa
aattttgagaggttatctttcctttatctcataactggtaatttggaaaagctgtccaag
atgcttagaattgctgaagttaagaatgatgtcatgggtcagtttcacaatgccttgtac
ttgggtgatgtcagagaacgtgttaagatcttggagaatgctggccatctgccacttgct
tatgccgcagctaaggtccatgggctggaggatgttgtggaacgtctagcagctgagttg
ggagatgatattccatcttttcccaagggtaaagaaccatcccttctgatgcccccagcc
cctattatgtgtggtggtgattggcctcttctgagagtcatgaaaggtatatttgaaggt
gggctggataatatggtcagaggtggtgctgatgaggatgaagaagaagctgctgatggt
gattggggcgaggaactggacatggtcgatgcggttggtttgcaaaatggggatgtcaca
gcaattttggaggatggggaagcagctgaagaaaatgaagaggaggagggaggatgggac
cttgaagatctggagctacctcccgaggcagacacaccaagggcttctgtgagtgcccgc
tcatcagtttttgttgctccaactcctggtatgcctgtaagccagatttggattcagaga
tcttcacttgctgctgaacacgctgcggctggcaatttcgacactgccatgcgactactc
aacaggcaacttggaattaaaaactttgtgcctttaaaacccatgtttcttgatcttcac
tcaggcagccatacctatttacgtgcattttcatctaccccagtgatttcactggctgtt
gaacggggatggaacaagtctgctagccccaatgttaggggccctccagctctggttttc
aacttctctcaattggaagagaagcttaaggctggttacaaagccacgacagctgggaaa
tttacggaggcacttaaactctttcttaacattcttcacacaattcctctgatagttgtt
gactcgaggagggaagttgatgaagtcaaggaattgattattatagtcaaagagtatgtt
ttgggtctgcaaatggagctcaagaggagggagatgaaagacaatccagtacgccaacaa
gagcttgctgcctacttcacacactgcaacctgcaagctcctcacttgaggcttgcgctt
caaaatgcaatgactgtctgcttcaagaataagaaccttgctacggcagctaactttgcc
agacggctattggagacaaaccccccgaacgagaaccaggcaaggtctgccaggcaagtg
ttggcagcttcagagaggaatatgacagatgctgctcagctgaactatgattttagaaat
ccttttgtggtatgtggtgcaacatatgttccaatttatcgaggacaaaaggatgtctct
tgctcgtattgtggttcccgatttgtaccaagcaatgaagggcagctgtgtactgtttgt
gatcttgcagtagttggggcagatgcttcagggttgctctgttctccttcccagatacga
tga

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