Populus nigra (Lombardy poplar): 133678570
Help
Entry
133678570 CDS
T10372
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133678570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133678570
Spliceosome [BR:
pnz03041
]
Common components
Common spliceosomal components
SR proteins
133678570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
RRM_5
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
133678570
NCBI-ProteinID:
XP_061956907
LinkDB
All DBs
Position
18:complement(13338964..13343067)
Genome browser
AA seq
370 aa
AA seq
DB search
MRSIFCGNFEYDARQTELERLFKRYGRVERVDMKAGFAFIYMEDERDAEDAIRGLDRVEF
GRKGRRLHVEWTKQERGARQPGGSSRKSANTRPSKTLFVINFDPHHTRTKDLERHFEPYG
RIVSVRIRRNFAFVQYEAQEDATKALDATNMSKLLYRVISVEYAARDDGERRDGHSPDRS
RDRSPDRRGHDRRRSPSPYRRERGSTDYGHGPSPYRKERVSPDSGCRHSPSPYRRDRASP
DYGRGSTRSPSRRERAGSDHGHGPSRGPYRKDKASPVNGNGPSDSPYQREERLSPENGRV
PSRSPYGREKSNPDKGRGSSHSPSERDGSSPENGQWRSPSSNPDKRDSALGRVESLRHER
YHSQSPAADE
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctatcttttgtgggaactttgagtatgatgcaagacagactgagctggaacgg
ctattcaaacgatatgggagagttgaacgggtggatatgaaagctggatttgcttttatt
tatatggaagatgagagagatgctgaggatgcaattcgaggacttgatcgtgtagaattt
ggtcgcaagggccgcagacttcatgttgaatggacaaagcaagaacgtggggctagacag
cccggtggctcatcaagaaaatctgctaacacaaggccatctaagactttatttgttatc
aactttgatccacatcatactaggactaaggatttggagaggcactttgagccatatggg
aggatagtgagtgtaaggataagaagaaattttgcatttgttcagtatgaagcacaggag
gatgccactaaagcactggatgcaacaaacatgagcaagctgctgtatcgagttatttca
gtggaatatgccgctcgagatgatggtgaaaggagggatggacacagtcctgatagaagt
cgtgataggtcacctgataggcgaggacatgataggaggcgttctccaagtccttaccga
agagaaaggggaagcactgattatggccatggccccagtccttatcgcaaagagagggtt
agcccagattctggatgtcgccacagtcctagcccctataggagagatagggctagccct
gactatggccggggttcaactcgtagtccttccaggagagagagggctggcagtgaccat
ggccatggccccagccgtggtccttaccgcaaggacaaggctagtcctgtcaatggtaat
ggccctagtgatagtccttatcaaagggaagaaaggcttagccctgaaaatggtcgtgtc
ccgagccgtagtccatatggaagagaaaagtctaacccagacaaaggccgtggctccagc
catagtccttctgaaagagatgggtctagccctgaaaatggtcaatggagaagcccaagc
tccaatcctgacaagagggacagtgcacttggaagagttgaaagccttaggcatgagaga
taccacagtcaatcaccagcagcagatgaatga
DBGET
integrated database retrieval system
