Populus nigra (Lombardy poplar): 133678715
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Entry
133678715 CDS
T10372
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133678715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133678715
03036 Chromosome and associated proteins [BR:
pnz03036
]
133678715
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133678715
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133678715
PBAF complex
133678715
GBAF(ncBAF) complex
133678715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
133678715
NCBI-ProteinID:
XP_061957161
LinkDB
All DBs
Position
18:10804140..10806784
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AA seq
536 aa
AA seq
DB search
MNNSSSNPGRSIGVPPSFVNSVAKAQSMHVNHQAPQLLSQSQPQTQVGHPGHFQLSEPQA
QVLGHAQYAQAAHAHFQSQIQLANQSIAQLQNVNSGNVGVQSPPVATPSITSAKKSSHKP
PSRPSGGSSNANMASLFKTMELTPAAHRKKRKLHEKEIPEKVAALLPESALYTQLLEFEA
RADAAMARKKMDIQESLKNPPRVRKTLRVYVFNTFENQVQGANERKNAEPPSWSLKIIGR
ILEDGKDPVLTGMIQKSYPKFSSYFKKITIYLDQSLYPDNHVILWESTRSPVLHEGFEVK
RKGNKEFTARIRLEMNYVPEKFKLSPALSEVLGIEIETRPRILAAIWHYVKSRKLQNPND
PSFFTCDPLLQKLFGEEKMKFSLVSQKISLHLTPPQPIHLEHKIKLSGNFPAGTTCYDFI
VDVPSPLQKDLAAYLTSTESNKEIDACDELICNSILKIHEHRRRRAFFLGFSQSPAEFIN
ALIASQSKDLKLVAGDASRNAEKEQRSGFYNQPWVEDAVIRYLNRKSTGSDAPGSS
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagtagtagtaatcctggaagaagtattggggttccgccctcgtttgtgaat
tctgttgcaaaggcacaatctatgcacgtgaaccaccaagcaccgcagttactatcacag
tcacaacctcaaacacaagttgggcatccgggccactttcagctgtccgagccgcaagct
caggtcctgggacatgctcagtatgcacaggcggctcatgctcactttcaatctcagata
caattggccaaccaatccattgctcagttgcaaaatgtcaattctggtaatgttggtgta
caatcacctcctgtagccacgcctagcattactagtgctaaaaagtccagccataaaccg
ccttcaaggccttcaggtggttcatcaaatgccaacatggcttcactttttaagaccatg
gagttgactccagctgctcataggaagaaaaggaagcttcatgagaaggagatacctgaa
aaagtggcagctcttttgccagagtctgcactttatacccagctgcttgaatttgaggct
agagcggatgctgctatggcaagaaagaagatggatattcaagagtcacttaaaaaccct
ccacgtgttcggaaaacacttcgggtatatgtatttaacacttttgaaaatcaggtgcaa
ggggctaacgagaggaagaatgctgagcctccttcttggtcattaaagatcattgggagg
atattggaagacgggaaagaccctgtgctgactggaatgatccagaaatcatatccaaaa
ttctcatcttatttcaagaaaattacaatatacttggaccagagcctgtatccagataac
catgtaattttatgggagagcacacggtcacctgttcttcatgagggctttgaggtcaag
agaaaaggaaacaaggaatttactgcaagaattaggctggaaatgaattatgtgcctgag
aaattcaagctttcacctgctctttcagaagtccttggaattgagatagagactcgcccc
agaattttggcggcaatttggcattatgtgaagtctaggaagttgcagaacccaaatgat
ccctccttcttcacatgtgacccccttcttcagaaactatttggggaagagaagatgaaa
ttttctctggtttcacagaagataagtctgcatttaacccctccacagcctattcatttg
gaacataagatcaagctctcagggaatttcccagctggaactacttgctatgatttcata
gtcgatgttccttcaccattacaaaaggaccttgctgcgtacttgaccagcacagagagt
aacaaagaaattgatgcttgtgatgaattgatatgtaactctatactgaagatacatgag
catcgtcggaggcgggctttctttcttggtttcagtcagtctccagcagagtttattaat
gctttgattgcttctcagagcaaagatctgaagcttgtcgctggagatgctagccgcaat
gcagaaaaagagcagcgatctggtttctataatcagccatgggtggaagatgctgttatt
cgttacctaaatcgcaagtctacaggaagtgatgctcctggaagctcttga
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