Populus nigra (Lombardy poplar): 133678909
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Entry
133678909 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133678909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133678909
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133678909
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133678909
Complex C
U5 SnRNP specific factors
133678909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
Motif
Other DBs
NCBI-GeneID:
133678909
NCBI-ProteinID:
XP_061957407
LinkDB
All DBs
Position
18:complement(10848170..10858385)
Genome browser
AA seq
2183 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVHTTDTRRRDTHEPTGEPESLWGRIDPGSFGDRAH
RGRPSELDEKINKAKGKKKERDALSEAVRGCQAKRRRFGEESVLTSTEEGVYHPKTKETR
AAYEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNSMYD
QFVSIGKLITDYQDGGDGAGVSVANGDDVLNDDVGVAVEFDQDNEDEEGDSDLDMVPQEE
EEDDDVVEAGGSGAMQMGGRIDDDEMRGANEGMNLNVQDIDAYWLQRKISQAYEQQIDPQ
QCQKLAEEVLNLLAEGDDREVETKLLLHLQFDKFSFIKFLLWNRLKIVWCTRLVRSKDQE
ERKQIEEEMMGSGPDLAGILEELHATRATAKERQKNLEKSIREEARWLKDEAGGDGDRGK
RGLVDRDAESGWLKGQPQLLDLDSIAFEQGTGLLMANKKCDLPVGSFKHQKKGYEEVHVP
ALKPRAIPPNERFVKISDMPDWAQPAFEGMQQLNRVQSKVYETALFKADNILLCAPTGAG
KTNVAVLTILQQIALNRNLDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQVKE
LSGDQTMTRQQIEETQIIVSTPEKWDIISRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL
ESIIARTVRQIETTKENIRLVGLSATLPNFEDVALFLRVDLGKGLFHFDNSYRPVPLSQQ
YIGININKPLQRFQLMNDICHEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTV
SRFLREDSTSREILQTDSELVKSNDLKDLLPYGFAIHHAGMTRGDRELVEERFMDRHVQV
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI
IITGHRELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGSVQNAREACHWLEYTYLYVR
MMRNPTFYGLAPDVLARDITLEERRVDLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIA
SYYYITHGTMSTYNEHLKPTMGDIELCHLFSLSEEFKYVTVRQDEKMELAKLLDCVPIPI
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWARLA
EKALNLCKMINKRMWSVQTPLRQFHGILNEILMMLEKKDLSWERYYDLKPQEIGELIRFP
KMGKTLHKVIHQFPKLNLAAHVQPITRTVLRVELAITADFLWDENVHGYVEPFWVIMEDN
NGDSILHHEYFMLKRQSVDEEQVVDPTLNFTVLIHEPLPPQYFIRVVSDKWLGSQTVLPI
SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDN
VLVSAPTASGKTTCAEFAILRNHQKGPECVMRAVYIAPLEAIAKERYRDWERKFGQGLGM
RVVELIGETATDLKLLERSQIIISTPEKWDALSRRWKQQKYVQQVSLFIIDELHLIGGQS
GPVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFSPGVRPVPL
EIHIQGVDIANFEARMQAMTKPTYTCIVKHAKNGKPAIVFVPTRKHVQLAAVDLMTYSSV
DGGEKPAFLLRSEELGPFIGKIQEEMLRATLYQGVGYLHEGLSSLDQEVVCQLFEAGWIQ
VCVMSSSLCWGLPLSAHLVVVMGTQYYDGQEDAHTDYPVMDLLQMMGHASRPLLDNSGKC
VILCHAPRKEYYKKFLHEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYR
RLAQNPNYYNLQGVSHRHLSDHLSELVENTLADLEKSKCVAIEDDRDLSPLNLGMIASYY
YISYTTIERFSSSLTPKTKMKGLLKILSSASEYVQLPIQPGEEEVLRRLINHQRFSFENP
RYADPHVKANVLLQAHFSRQSVGGNLALEQREVLLSASRLLQAMIYVISSNGWLNCALLA
MEVSQMVTQGMWERDSMLLQLPHFTKELAKKCQENPGKNIETVFDLVEMEDDERRELLQL
SDSQVLDIVRFCNQFPNIDMSYEVMDGDNVRAGEDITLLVTLARDLEGTEVGPVDAPRYP
KAKEEGWWLVVGDTKSNLLLAIKRVSLQRKSKVKLEFAAPTDAGRMSYTLYFMCDSYLGC
DQEYNFSVDVGEAAGPDEDSEGE
NT seq
6552 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggtggtggtgctgaggcacacgctcgattcaagcaatacgagtacaga
gccaattccagtctggttcatactactgatactcgacgacgtgatactcatgagcccact
ggtgaacctgagtctctctggggcaggattgaccctggaagttttggtgaccgtgctcac
agagggagaccttctgagttagatgagaagattaacaaggctaaggggaagaagaaggag
cgtgatgctctttctgaagctgtccgtggttgtcaagctaagaggcgccgctttggagag
gagagtgtccttacttctactgaggagggcgtttaccaccccaagaccaaggaaactaga
gctgcctatgaagccatgctaagtgtcattcagcagcaattgggtggtcagcctcttaat
attgttagtgctgccgctgatgagattttggctgttctcaagaatgagtctgttaggacg
caggacaagaggaaggagattgagaagttgttgaaccctattcccaacagtatgtatgat
cagtttgtttcaattggtaagcttatcactgattaccaagatgggggtgatggtgctggg
gtctctgttgctaatggtgatgatgtccttaatgatgatgtgggtgttgctgtggagttt
gatcaggacaatgaagatgaggaaggggatagtgatctggatatggtgccacaggaggag
gaagaggatgatgatgtggtggaagcaggtggttctggggccatgcagatgggtggcaga
atcgatgatgatgaaatgaggggggcaaatgagggaatgaaccttaatgttcaggatatt
gatgcttattggctacaaaggaagatttcacaagcttatgaacagcagattgatccacaa
cagtgccagaagctagcagaagaagtgctgaatttacttgccgagggagatgacagggaa
gttgaaacgaagttgctgttacatctccagtttgataagttcagctttataaagtttctt
ttgtggaacaggctgaagattgtctggtgtacacgtttagttaggtccaaagatcaggag
gagaggaagcagatagaggaggaaatgatgggttcaggtcctgatttggcagggattttg
gaggaactgcatgccactagggcaactgctaaagagaggcaaaagaacttggagaagagt
ataagagaagaggctcgctggctgaaagatgaggctggtggagatggggataggggtaag
agaggacttgttgatagagatgctgaaagtggttggttgaaaggccagcctcagttgctt
gacttggacagcattgcttttgaacagggtactggccttttgatggcaaacaaaaagtgt
gatcttcctgttggttcttttaaacatcagaaaaagggttatgaagaagttcatgtacca
gcattgaagccacgggcaatacctcctaatgagaggtttgtaaagatatcagacatgcca
gactgggctcaaccagctttcgaagggatgcaacagttgaacagggtgcagagtaaagtc
tatgagaccgcccttttcaaggcagataatatactcctgtgtgctccaactggagcagga
aaaaccaatgttgcagtgctcactatacttcagcaaattgccttgaacaggaatctggac
ggttcattcaacaataacaattataagatagtttatgtggctccaatgaaagcccttgtg
gctgaagttgtgggtaatttgtccaatcgtctgcaggagtatggtgtccaggtgaaggaa
ctaagtggagatcaaacaatgacccgccaacaaattgaggaaactcagataattgtgtca
acccctgaaaagtgggacattatctccagaaagtctggtgatcgcacctatactcaactt
gtgaaactccttattattgatgagattcaccttcttcatgataatagaggacctgtgctt
gagagtattattgcaagaaccgtgaggcaaattgaaacaacaaaggaaaatatccggttg
gtggggctgtcagctacactccctaattttgaggatgtggctttgtttttacgggttgat
ctgggaaaagggctcttccattttgacaatagctacaggccagttcctctttctcaacag
tatattggaatcaatataaataagccactgcagaggtttcagttgatgaatgatatctgt
cacgagaaggtaatggatgtagcaggaaagcatcaagttctcatctttgtccactcaagg
aaggaaacagccaaaacagctcgagcaataagggacactgcacttgctaacgatactgta
agtaggttcttgagagaggacagtacaagtcgtgagattctccaaactgattcagaattg
gtgaaaagcaatgatctcaaagatcttctgccctatggctttgctattcatcatgctggg
atgacaagaggtgatcgtgaacttgttgaggagcgctttatggataggcacgtgcaagta
ctggtttctactgcaactctagcttggggtgttaacttgcctgctcacactgtgattatc
aaagggactcagatttacaatccagaaaaaggagcatggactgaactaagtccactggat
gttatgcagatgttgggtcgtgctggcaggcctcagtatgattcatacggggaagggatt
atcatcacaggccatcgtgagctgcagtactacctttccttgatgaatcaacaacttccc
attgaaagtcagttcgtatccaagctggctgatcagttgaatgcagaaattgttctagga
tcagttcaaaatgccagggaagcttgccactggctcgagtatacttacttgtatgtccgg
atgatgcgaaaccctacattttatggcttagcaccagatgttcttgctagggatatcaca
ttggaggagaggagggttgatctgatacattctgctgctactatcttggacaaaaataat
ttggtcaagtatgacaggaagagtggatatttccaggtgactgacttgggtcgaattgcg
agctactactatattactcatgggacaatgtccacatataatgagcatttgaagccaaca
atgggagatattgagctgtgtcatctattctcattaagtgaagaatttaaatatgttaca
gttagacaagatgagaagatggaactggcaaagcttttggactgtgttccaattcctatc
aaggaaagcctagaggagcctagtgccaaaattaacgttttgctgcaagcatatatttct
cagctaaagctcgaagggctttcattgacatctgacatggtgttcataactcagagtgct
ggtcgtcttatgcgagctctctttgagattgtcttgaaaagaggatgggcccggttagct
gagaaggctttgaacttgtgtaaaatgattaataagagaatgtggagtgtccagactccc
cttcggcaattccatgggatccttaatgaaattctgatgatgttggagaagaaagatttg
tcatgggaaaggtactatgaccttaaaccacaggagattggtgagctcatccgttttccc
aagatgggcaaaacactgcacaaggtcatccaccaattcccaaagttaaaccttgcagca
catgttcagcccattactcgcaccgtgttgagggttgaacttgcaataactgcagacttt
ctatgggacgaaaacgttcatggatacgtggagccattttgggttatcatggaggataat
aatggtgactctattcttcatcacgagtacttcatgctgaaaaggcagtccgttgatgag
gaacaggttgtggaccccacactgaatttcacagtgttgatccatgagccattgccacct
cagtatttcattcgtgttgtgtcagataaatggcttggttcacaaacagttttgcccatc
tctttcaggcatcttatcttgccagaaaagtatccacctcctacagagttgttggacttg
cagcctctgcctgtgactgcgttgagaaatccatcatatgaagctctttatcaagatttt
aagcattttaatccagtgcaaactcaggtctttactgttctttataatacagatgataat
gtcttggtttctgcaccaacagcgagtgggaaaactacctgtgcagagtttgccatattg
aggaatcaccaaaagggaccagagtgtgtaatgcgtgcagtgtatattgctcctcttgaa
gcaattgctaaggaacgctatcgtgattgggagagaaagtttggccaaggtcttggcatg
cgcgttgttgaattaattggggaaacagctacagacttgaagctacttgaaaggagtcaa
ataatcatcagcactcctgagaaatgggatgctctgtctcgacgatggaaacagcagaag
tatgtccagcaagttagtctttttatcattgatgagcttcacttgattgggggtcaaagt
ggtcctgtcttggaggtgattgtctctaggatgcgatacattgctagtcagatagagaac
aagatacggattgtggctttgtcttcctctcttgcaaatgccaaggatcttggggaatgg
ataggagctacatctcatggccttttcaatttttctcctggtgtgcgtcctgtgcccctg
gaaatacacattcaaggtgttgatattgccaattttgaggcaaggatgcaagcaatgacg
aaaccaacatatacttgtattgtcaagcatgcaaagaatggtaagccagctattgtcttt
gttcccacaagaaagcatgtgcaactcgctgctgtagatctgatgacatattcaagtgtg
gatggtggagagaagccagcttttctgttaaggtctgaagaattggggcctttcattgga
aagatccaggaagaaatgttgagagccactttgtaccaaggagttgggtacttgcatgag
ggcttgagcagcttggatcaagaagttgtgtgccaactgtttgaagctgggtggattcag
gtttgtgtcatgagtagttcattatgctgggggttgcctttgtcagcacatttagtggtg
gtgatgggaactcaatactatgatgggcaagaagatgctcacacggattatcctgtcatg
gatcttctgcagatgatgggtcatgctagccgacctcttctagataactctggaaagtgt
gtcatcctttgccatgcacctcgtaaagaatattacaagaaattcttacatgaagcattt
cccgtggaaagtcatttgcaccatttcttacatgataattttaatgctgaagttgttgct
ggagttattgagaacaagcaggatgctgtagattatctcacgtggacattcatgtacagg
aggctcgctcagaatccaaactactacaatctccagggagttagtcacaggcatctttct
gatcacctctcagagcttgttgagaacacattggctgacctagagaagagtaaatgtgtt
gctatcgaggatgacagggacctttctcctttgaaccttggcatgatagcatcttactat
tacatcagttatactactatagaacgttttagctcctctctgactcccaaaacaaagatg
aagggtcttctgaaaatcctctcttcagcctcagagtatgtgcaactgccaatacaacct
ggggaggaggaggtgcttcgaagattaatcaatcatcagaggttttcgtttgaaaatcct
agatatgctgatccacatgtgaaggctaatgtgttgctacaagcccatttctctaggcaa
tctgtgggtgggaacctagcattggaacagcgagaggtgcttctttctgccagtagattg
cttcaagcaatgatttatgtcatttcaagcaatggctggttgaactgtgctctccttgct
atggaagttagccaaatggtgacacaagggatgtgggagcgagattccatgcttctacag
cttccacacttcacaaaggagttggctaagaaatgccaggagaacccgggaaagaacatt
gagacagtgtttgatctggtagagatggaagatgatgagaggcgtgagcttttgcagttg
tcagattctcaggtgctagatattgtgaggttttgcaatcaatttcccaacattgatatg
tcttacgaggtgatggatggtgataatgtgagggcaggagaagacatcactttgcttgtc
acccttgcaagggatctagaggggacagaggtgggacctgttgatgccccaaggtatcct
aaagccaaagaagaagggtggtggcttgttgtcggtgataccaagagcaacctgttgctg
gccatcaagagggtttcccttcagaggaagtcaaaggtgaagctggagtttgctgctcct
acagatgctggaaggatgtcatacacactctatttcatgtgtgattcttatcttggctgt
gaccaggaatacaacttctctgttgatgtcggtgaagctgcaggcccagatgaagacagt
gaaggagagtaa
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integrated database retrieval system
