Populus nigra (Lombardy poplar): 133678935
Help
Entry
133678935 CDS
T10372
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133678935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133678935
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133678935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
133678935
NCBI-ProteinID:
XP_061957441
LinkDB
All DBs
Position
18:5258229..5266711
Genome browser
AA seq
944 aa
AA seq
DB search
MGENNNFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIA
KTYYHTTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVK
SGTPGNLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLGYVDLTKRVIGLAEFLDD
SHFTNVESALVALSCKECLLPMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQD
LGRLVKGPLEPVRDLVSGFEFAPGALGALLSYAELLADESSYGNYRIRKYNLDSYMRLDS
AATRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQ
AFVDDTGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKLYQSIIRLPYIKGALERYD
GQFSSLIKEKYLEFLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPSYEAALGALKA
EQESLEHQIHNLHKQTASDLDLPLDKGLKLDKGTQYGHVFRITKKEEPKIRKKLTTQFIV
LETRKDGVKFTNTKLKKLGDQYQKIVENYKSHQKELVSRVVQITATFSEVFEKLSGLLSE
MDVLLSFADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGK
SWFQIITGPNMGGKSTFIRQIGVNILMAQVGSFIPCDKATISVRDCIFARVGAGDCQMRG
VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVRELKAPTLFA
THFHELTALAHQKADQEPHAKQIVGVANYHVSAHIDSSNHKLTMLYKVEPGACDQSFGIH
VAEFANFPESVVALAREKAAELEDFSPAAIISDDAREEVGSKRKRECNMDDMSKGAARAH
RFLKDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQFF
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaataacaattttgaagaacagaacaagctccctgagctcaagctagatgct
aagcaggctcaagggtttctctctttcttcaaaaccctaccccatgaccctagggcggtt
cgggtctttgataggcgggactattatacagttcatgctgaaaatgcgaccttcattgca
aagacatactaccacactacgactgctttgcgccagttggggagtggatctaatggtctt
tctagtgtgagcattagtaagaacatgtttgaaacaattgcccgagatcttcttttggag
agaacagaccatactcttgagctctatgaagggagtggatccaattggaaactagtgaaa
agtgggactcctggaaatcttggcagttttgaagatgttttgtttgcaaacaatgacatg
caggattctcctgtggttgttgcactcttgttaaacttccgtgaaaaagggtgcactgtt
gggttgggttatgttgatttaacaaaaagagttattgggctggctgaatttctagatgat
agccactttacaaatgtggagtcagctttagttgccctcagttgcaaggaatgccttttg
cccatggagagtggcaagtccaatgactgtagaactctgcatgatgttttgaccaaatgc
ggtgtgatgttaactgagagaaagaaaaatgaattcaaaacaagagatttggtgcaggat
cttggtaggcttgtcaaaggcccccttgaaccagtccgagatttagtttctggttttgaa
tttgcacctggtgctttgggagcattattgtcctatgcagaattacttgcagacgagagc
agttatggcaattatagaattagaaagtacaatcttgacagctacatgagacttgattct
gctgccacgagggcactgaatgtccttgaaagcaaaactgatgcaaacaaaaattttagt
ttatttggtctcatgaatagaacttgtacagctggaatgggaaaaagattgcttcatatg
tggctaaaacagcctttattggaagtagatgcaatcaactccaggctagatttggtgcag
gcatttgtggacgataccgggcttcgccaagatctaagacagcatctgaaaagaatctca
gatattgaacgactgatgcacattgttgagaaaggaagagctggcttgcaccatattgtg
aaactttatcagtccatcataagactgccatacattaaaggtgctctggaacgatatgat
ggccaattttcatcccttatcaaggaaaagtatttggagttccttgaggtgtggactgat
gataaccacttgaataagttcattgctcttgtggaaactgctgttgacctagatcaactt
gacaatggggaatacatgatttcacctagttatgaagctgccttaggtgcactaaaagct
gaacaggagtcattggagcaccagatacacaatttgcataaacaaactgcttccgatctt
gaccttcctctagataagggattgaagttagataagggaacgcaatacggtcatgtcttc
cgaattacaaagaaggaagagccaaaaatacggaaaaagctgaccacccagtttattgtc
cttgaaactcgtaaggatggggtaaaatttacaaacacgaaacttaaaaaattaggtgac
cagtaccaaaagatagttgagaactataagagtcatcagaaggagcttgtcagtcgagtg
gttcaaattacagcaactttctctgaggtgtttgagaaattatctggcttgctttctgaa
atggatgtcttacttagttttgctgatttggcttctagttgtcctactccatacacaagg
cctgacatcactccatctgatgtgggagatattatattagaagggagtagacatccatgt
gtggaagctcaggattgggtgaattttattccaaatgattgtaaacttgtcaggggaaag
agttggttccaaataatcacagggcctaatatgggtgggaaatccacatttattcggcaa
ataggtgtgaatattctcatggcccaagttggttctttcattccctgtgacaaggctacc
atttctgtacgtgattgcatttttgcacgtgtgggtgctggtgattgtcaaatgcgtgga
gtttctacttttatgcaagaaatgcttgaaactgcttcaatccttaaaggagctacagat
aggtcattgataatcattgatgagttgggccgcgggacatcaacttatgatggatttggc
ttggcatgggccatatgtgaacacctggttcgagagttaaaagcacctactttatttgca
acccactttcacgaactgactgcattagctcatcaaaaagctgaccaggagccacatgcg
aagcaaattgttggtgttgcaaactatcatgtcagtgcacacatcgactcatcaaatcac
aagttgaccatgctgtacaaggttgagccaggggcttgtgatcaaagttttggtattcat
gttgcagaatttgcaaactttcctgaaagtgtagtcgcccttgcccgagaaaaggcagct
gaattggaagatttctcacctgctgcaatcatttcagatgatgctagagaagaggtcgga
tccaaacgaaagagagagtgcaatatggatgatatgtcaaaaggtgcagctcgggctcac
cggtttctgaaggacttctctgatttgccattagacacaatggacttgaagcaggctctg
ctacagataggcaaactgaaagatgacttggagaaagatgcagtgaattgccattggctc
cagcaattcttctag
DBGET
integrated database retrieval system
