Populus nigra (Lombardy poplar): 133679077
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Entry
133679077 CDS
T10372
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133679077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133679077
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133679077
mRNA degradation factors
5'-3' decay
Decapping complex
133679077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
133679077
NCBI-ProteinID:
XP_061957564
LinkDB
All DBs
Position
19:13168660..13173430
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AA seq
371 aa
AA seq
DB search
MPQNGKLMPNIDQQSTKLLNLTVLQRIDPLVEEILITAAHVTLYQFNIDLTQWSRKDVEG
SLFVVKSRNMQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYN
ARECEEVANLFSRILNAYSKVPQKPKVSLSSTKSEFEELEAVPTMAVMDGPLEPSSASAS
VVSDVPDDPAFVNFFSTAMTIGNASAAAVAGQSYQSSIPIPLHSQLTSVASSTMPTLQIP
SPPLSASIPLMPLLDVSDVSSSNNRTANLVKPSFFVPPSSSTRMMPPVSSSIPTAPPLNP
PTSLHRPYGAPLLQPFPPPTPPPSLTPASVPSPNHGPVISKDKVRDALLALVQDDQFIDM
VCRTLLNAHHS
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgccacagaatgggaaattgatgccgaacattgatcaacagagcacaaagctccttaat
ttaacagttcttcaacgaatcgatcctttagttgaagaaattctcatcactgctgctcat
gtcactctctaccagttcaatatcgaccttacccaatggagtcggaaagatgtcgaagga
tctctctttgtagttaaaagcaggaatatgcaacctaggtttcagtttattgtgatgaat
cgccggaatacagataatttggtggaaaatcttttgggagattttgagtacgaggttcag
gttccgtatcttctgtatcgaaatgcagcccaagaagtgaatggtatttggttttataat
gcacgcgagtgtgaagaggttgctaatctttttagcaggatacttaatgcatactccaag
gtgcctcagaagccaaaggtatcactatcatcaacaaaaagtgagtttgaggaattagaa
gctgtaccaactatggcagttatggatggtcctctggagccatcatctgcaagtgcttcg
gttgtctccgatgtgcctgatgatcctgcctttgtgaacttctttagtacagctatgaca
attgggaatgcatcagctgctgcagttgctggacagtcttaccaatcctcaattccaatt
cccttacactcccaactgactagtgttgcctccagcaccatgcccaccttgcaaatacca
tctcctcctttatcagcgtcaattcctttaatgccactgcttgatgtctctgatgtcagc
agcagcaacaaccggacagctaaccttgtaaagccttctttttttgttcctccatcttct
tctactcggatgatgccacctgtctcttcttctattcctactgctcctccacttaatcct
cctacaagtctacaccgcccatatggtgctccattgcttcaaccctttccaccacccact
cctccaccatctctcactcctgcttctgttcccagtccaaatcatgggccagttatcagc
aaagacaaagtccgagatgcactactggcacttgttcaggatgatcaattcattgacatg
gtttgtcgtacccttctgaatgcacaccattcttga
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