Populus nigra (Lombardy poplar): 133679381
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Entry
133679381 CDS
T10372
Name
(RefSeq) probable CoA ligase CCL6 isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00061
Fatty acid biosynthesis
pnz00071
Fatty acid degradation
pnz01100
Metabolic pathways
pnz01212
Fatty acid metabolism
pnz04146
Peroxisome
Module
pnz_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
133679381
00071 Fatty acid degradation
133679381
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
133679381
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pnz01004
]
133679381
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133679381
Enzymes [BR:
pnz01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
133679381
Lipid biosynthesis proteins [BR:
pnz01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
133679381
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of breast milk
133679381
Exosomal proteins of breast cancer cells
133679381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
133679381
NCBI-ProteinID:
XP_061957946
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Position
19:complement(10149540..10155004)
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AA seq
661 aa
AA seq
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MSMEFIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENK
MLGRRQVIDSKQVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAM
EACDSQAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVS
FGKISDMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVI
LTNGALMAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWRG
DVRYLMEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKG
FPQEKAAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEEFLRVTSCSTLSQGYGLTE
SCGGCFTSIGNVYPMVGTVGVPMTTIESRLESVPEMGYDALSSVPRGEICLRGSTLFSGY
HKREDLTNEVVVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENVYLRC
PLITSIWVYGNSFESFLVAVVVPDRQALEDWAAKHNETDDFKSLCKNLKARKYILDELNS
IGKTNNLRGFEMLKAVHLEPHPFDMERDLITPTFKLKRPQLLKCYKDCIDQLYSDAKGLK
P
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatggaattcatcgtaaaagttgaagaatcaagacctgcaagtgatggaaaacca
tcagcagggcctgtttacaggtccatttatgccaaagatggcctcatggatttgcctgca
ggactagagtctccttggcagttctttagtgattctgctctcaagaaccctgaaaacaaa
atgctaggtaggcggcaagtcattgattccaagcaggtgggtccttatgtgtggctgaca
tacaaagaggtttatgattctgccatgaggatgggttccgcaatgaggagacgcggtgtc
aatcctggagaccgttgcggtatatatggttccaactgcccagaatggatcactgctatg
gaggcttgcgacagccaggccataacatatgtaccactgtatgacactcttgggcctaat
gctgtggagttcatcatcaatcatgctgaagtttcaatagcctttgtccaagagaacaag
ctctcttctattctatcttgccttccaaagtgctcttcaaatttaaaaactattgtcagc
tttggaaaaatttctgacatgcaaaagaaggaagctgatgaactaggggtatcttgcttt
tcatgggaagaatttcctcagttggggagtttggattgtgaattacctccaaaacacaag
actgatgtctgcacaataatgtacactagtggaacaacaggagaaccaaaaggtgtcatc
cttaccaacggggctcttatggcagaagtattgtctgtggaccagctactttttctgaca
gacagagtggctgcagaagaagattcatacttctctttcctacccttggcccatgtatat
gatcaagtaattgagacctattgcatctacaaaggtgcctcaataggattttggcgaggg
gatgtaagatacttgatggaggacatccaagaactgaagccaagtatattttgtggggtt
cctagagtttatgaccgcatatatactggaacacttgctaaggtttcagctggaggtgga
ttaaagaagaagttatttgattttgcctataactacaagttgggttatctagagaaggga
tttccacaagagaaagcagcacccctcctggacaggcttgtcttcgataagacaaagcaa
gcactaggggggagagtacgtatcttgttatctggtgctgctcctttgcctaagcatgta
gaggagtttttgagggtcacatcctgttctactttatcacagggatatggtctcactgaa
agttgtgggggctgtttcacatccataggcaatgtgtatcccatggtgggaactgttgga
gtgcccatgacaaccattgaatcaagactcgagtctgtgccagagatgggatatgatgca
ttatccagtgttccgaggggagagatttgcctgaggggaagtacattgttctctggttac
cacaagcgagaagatctaactaatgaagtcgtcgttgatggatggtttcatacaggtgac
attggagaatggcaacccaatggagcaatgaagattattgacaggaaaaagaacatattt
aagctatctcaaggtgaatacgttgcggtagagaaccttgaaaatgtctacctgcgatgc
cctcttataacatcgatttgggtctatggaaacagtttcgaatcatttcttgttgctgta
gttgtccctgacagacaggcgcttgaggattgggctgcaaagcataacgagactgatgat
tttaaatcgttatgcaaaaatctgaaggcaaggaaatatatactcgatgagctcaatagc
attggtaaaacaaacaaccttagaggatttgaaatgttaaaagctgttcatttggaacca
catccatttgatatggagagggacctgataacccctacatttaagctcaagaggccacaa
ttactcaaatgttacaaggactgcattgatcaactgtacagtgacgcaaagggcttgaag
ccatga
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