Populus nigra (Lombardy poplar): 133679615
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Entry
133679615 CDS
T10372
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133679615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133679615
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133679615
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133679615
NCBI-ProteinID:
XP_061958250
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All DBs
Position
19:2631132..2635293
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AA seq
257 aa
AA seq
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MASTGGAAPGTYTPTPTKKTQRSSFFSDSDVDWLRPDGRGFQQCRPAFFRTGAVNSAAGS
AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSCTTFATPARGLGSDNKEFSSMLH
KALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAGVSVSC
LGRNLIIDPILEEESFQDGSLMITCMPSRYEVTQLSITGEWSTAKLNEAMQLCLDACSKL
DKIMRACLKEAASASLD
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacaggtggtgctgccccaggcacttacactcccactcccaccaagaaaacc
caacgttcttcattcttctctgactctgatgtcgactggcttcgtcccgatggtcgtggt
ttccagcagtgccgacctgcttttttcaggactggtgcggtgaattctgctgcaggatct
gcatatgctgaatttggaaatacaaaggtcatcgtttctgtgtttgggcctagagaaagt
aagaaagcaatggtgtacagtgatgtgggcaggcttaattgcaatgttagctgtaccact
tttgccacccctgctcgtggactgggatcagataataaagagttctcttccatgcttcat
aaggctttggaaggcgcaatcatgttggaaacttttcccaagacaactgtagatgtgttt
gcattggtgttagaatctggcggcagtgatctacctgttgtaatatcttgtgcaagcctt
gccttggcggatgcagggattatgatgtatgaccttgttgctggagtttctgtgtcttgt
cttggtagaaacctcatcattgatccaattttggaagaggaaagttttcaagatggaagc
ctgatgatcacttgcatgccttctcgttatgaggtcacgcagctttctattacaggggaa
tggtcaactgcaaaactgaatgaggcaatgcagctttgcttggatgcttgctcaaagctg
gacaagataatgagggcttgtttgaaagaggctgcttcagcttcactggattag
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