Populus nigra (Lombardy poplar): 133679685
Help
Entry
133679685 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
Brite
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
133679685
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
HECT type E3
133679685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133679685
NCBI-ProteinID:
XP_061958341
LinkDB
All DBs
Position
19:11602662..11612691
Genome browser
AA seq
1892 aa
AA seq
DB search
METRSRKRAEASSSAATNTTGTTTRSNKRSRTNAATATATTTTATATRSRSTRAHPLPMD
STPVESSSSSRSRRNRNNNSNSESDKGKEKEHEVRVSRENREISNNLDSGNDNNNPNVDD
DDDDDSEGGGIAAFHQNLTSASSALQGLLRKLGAGLDDLLPSPVMGSGSSSHQSGRLKKI
LSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNNESNPDIMLLA
ARAITHLCDVLPSSCAAVVHYGAVSCFVARLITIEYMDLAEQSLQALKKISQEHPTACLR
AGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVL
EHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTPTYTGLIRL
LSTCASGSPLGAKTLLLLGVSGILKEILSGSGVSANSSVPPALSRPADQIFEIVNLANEL
LPPLPQGTISLPTSSSMLVKGSVVKKSPSSSSGKQDDINGNVPEVSAREKLLNDQPELLQ
QFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMHFSNAEMIQSLLSMTNISSFLAGVLA
WKDPHVLVPALQVAEILMEKLPGTFSKIFVREGVVYAVDQLILAGNPNTAPTHGSSAEKD
NESVPGTSSRSRRYKRRSGSSNPEANSSEESKNPISANAGSPPSSIEIPMVNSNLRMAVS
ACAKAFRDKYFPSDPGAAEDGVTDDLLHLKNLCTKLNAGVDDQKTKAKGKSKASASRLID
SSTNKEEYLIGVISEMLAELGKGDGVSTFEFIGSGVVATLLNFFSCGYSTKEKISEANLP
KLRQQALRRFKSFAILALPSSIDEGSAAPMAVLVQKLQNALSSLERFPVVLSHSSRSSSG
GARLSSGLSALSQPFKLRLCRAQGEKALRDYSSNVVLIDPLASLAAVEEFLWPRVQRSET
GHKASASAGNSESGTAQPGAGASSPSTSIPASATRRHSSRSRSSVNIGDSARKEPIPEKS
TSTSTSKGKGKAVLKPPLEETKGPQTRNAARRRAAIDKEAQMKPVNGDSSSEDEELDISP
VEMDDALVIEDDDISDDDDDDHEDVLRDDSLPVCMPEKVHDVKLGAASEDSNVAPPASDS
QSNPASGSSSRAVAVRGSDSTDFRSGSSYGSRGAMSFAAAAMAGLGSANGRGIRGGRDRQ
GRPLFGSASDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLEEDDEDRYGGRDFISSDGSRL
WSDIYTLTYQRADGQADRASVGGPSSSASKSIKGGSSNSNSDTQVHRMSLLDSILQADLP
CDLEKSNPTYNILALLRILEGLNQLAPRLRVQLVSDNFSEGKISSLDELMTATGVRVPAE
EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRA
LYRLQQQQGADGHGSANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEY
FGEVGTGLGPTLEFYTLLSHDLQKVTLGMWRSNSAAEKPSMEIDGDDDKNGKSNNESGTA
VAADLVQTPLGLFPRPWPPTASASEGSQIYKTIEYFRLVGRVMAKALQDGRLLDLPLSMA
FYKLVLGQELDLYDILSFDAEFGKTLQELHALVCRKHYLESIESDHEAIADLHFHGTPIE
DLCLDFTLPGYPDYILKPGDETVDINNLEEFISLVVDATVKTGITRQMEAFRDGFNQVFD
ISSLQIFTPQELDYLLCGRRELWEPDTLVDHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQ
RAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAGNAMPNGTGPSESADDDLPSVMTCA
NYLKLPPYSTKEVMYKKLLYAISEGQGSFDLS
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtagccggaaacgggcggaggcctcctcatctgccgccaccaacaccacc
ggtaccactactcgctccaacaaacgatcccgcaccaacgctgccaccgcaacagcaacg
acaacaaccgccaccgctacccgctctcgctccacacgtgctcaccctctccccatggac
tccactcctgttgaatcgtcttcttcttctcgctcgcgtcggaataggaacaataatagc
aatagtgaatcggataaaggcaaagagaaagaacatgaagttagggtttcgcgtgaaaat
agggaaatcagtaataatttggattctggaaatgacaacaataaccctaatgtcgatgac
gacgacgatgatgacagcgaaggcggtggaattgctgctttccatcagaatttgacttca
gctagtagtgctttacagggtttgttgagaaagttgggtgccggtcttgatgatttactg
ccttctccagtgatgggttcaggttcaagctcgcatcaatcagggagattgaagaagatt
ttgtctgggttaagggctgatggagaagaagggaagcaagtggaagctttaacgcagctt
tgtgaaatgctttctatcgggactgaagagagtctgagtactttttctgtggattccttt
gttccggttcttgttgggttgttgaataatgagagtaatcctgatattatgttgcttgct
gcaagggcgattacgcatttgtgtgatgtcttgccttcgtcttgtgctgctgttgttcat
tatggcgctgtttcgtgttttgttgctaggttgattactattgagtacatggaccttgct
gaacagtctctgcaagctctaaagaagatatctcaagagcacccaactgcatgtctgcgt
gccggtgctcttatggcagtgctttcttatcttgattttttttctactggagttcagcga
gtagcattatctactgctgcaaatatgtgcaagaaacttccttcagatgcagctgacttt
gtgatggaagcagttcctctgttgaccaaccttcttcagtaccatgatgccaaggttttg
gagcacgcttcagtttgtttgacaaggattgctgaagcctttgcctcatctccagacaaa
ttagatgaactgtgtaatcatggacttgtcacgcaagctgcctctctcatttccactagc
agttccggcggtggacaggcttctctcagcactccaacatatacgggtttaattcgactg
ctatccacttgtgcaagtgggtctcctttaggagccaaaacattgcttcttcttggtgtc
agtggcattcttaaagagatactatcaggttctggggtttctgctaactcctctgttcct
cctgctctaagtcgacctgcagatcagatttttgagattgtcaatctggcaaatgagctt
cttcctccgcttccacaaggaactatctctctcccaaccagctctagtatgttggtcaaa
ggatctgttgtgaagaagtctccttccagtagttctgggaaacaagatgacatcaatgga
aatgttcctgaggtctcagctcgtgagaaattattaaatgatcagccagaacttctgcag
caatttggaatggaccttcttcctgttctgatacagatttatggttccagtgtcaacagt
cctgttcgccacaagtgtctctcagttattgggaagttgatgcacttcagcaatgcagag
atgattcagtctctacttagcatgacaaacatatcaagtttcctagctggggtgttagca
tggaaagatccacatgtcttggttcctgcccttcaagtagccgagattcttatggaaaaa
cttcctgggactttctccaagatttttgtcagagaaggtgtggtttatgctgtagatcaa
cttatcttagctggaaacccaaatactgctcctacccatggttcttctgctgaaaaggat
aatgagtctgttcctggaacttcgtcacgttccaggcgttacaaacgtcgcagtgggagc
tcaaatcctgaagcaaattcatctgaagaatccaaaaatcctatttctgcaaatgctggc
tcacctccaagttctatagaaatcccaatggtcaattcgaatttgcgaatggcagtcagt
gcatgtgctaaagctttcagagataagtacttcccctcagatcccggggctgctgaagat
ggggttactgatgaccttttacacttgaagaatctctgcacaaagttgaatgctggtgtt
gatgaccaaaagactaaagcaaagggaaaatcaaaggcttctgcatcccgtcttattgac
agctccacaaataaggaagagtacttgattggggtgatatccgagatgctagcagagctt
ggcaaaggggatggtgtatccacctttgagtttattggcagtggtgttgtggcaaccttg
ctgaattttttttcttgtggctattctaccaaggagaaaatttcagaagctaacctgcca
aagcttcggcaacaagcacttagaagatttaagtcatttgctatcctggcccttccttcc
agcattgatgaagggagtgcggcacccatggcagttttagttcagaagcttcaaaatgct
ttgtcatccttggagcgttttcctgttgttctgagccattcttctaggtcatctagtgga
ggtgcacgcctgtcttctggattaagtgcactatctcaaccttttaagttgcgtctctgt
cgggcccaaggggaaaaggctctccgtgattactcttccaatgttgtacttattgatcca
ttagcaagtttagctgctgtagaagaatttctttggccgcgagtgcagcgaagtgaaact
ggtcacaaggcttcagcatctgcaggaaactctgaatctgggactgcacagcctggagct
ggtgcatcatctccgtctacctctatccctgcttctgctactcgtcgtcattcttcaaga
tccagatcatctgttaatataggagattcagctagaaaggaaccgataccagagaaaagc
acaagcacaagcacatcaaagggaaagggcaaagctgttttgaaaccacccctggaggag
acaaaaggacctcaaactagaaatgctgctcgtagaagagcagccattgataaagaggca
caaatgaaaccagtgaatggggattctagttccgaggatgaggaattggatatatctcct
gttgagatggatgatgcattggtgattgaagatgatgacatctctgatgatgatgatgat
gaccatgaagatgtgttaagagatgattctcttcctgtttgcatgcctgaaaaggtacat
gatgtgaaactgggtgctgcatcagaggatagcaatgttgcaccaccagcaagtgacagc
caaagcaatcctgcttctggttctagtagcagggctgttgctgttaggggctcggattcc
actgattttaggagtggtagttcttatggatctaggggagctatgtcatttgccgccgct
gccatggctgggcttggatctgctaatggcagaggcatcaggggaggaagagatcgacaa
ggacgtcccttgtttggtagcgctagtgaccctccaaagttaatctttactgctggtggg
aagcaactaaataggcatttgacaatctatcaggccatccagcgacaacttgttctggaa
gaggatgatgaagacaggtacggtggcagggattttatctccagcgatgggagtaggctt
tggagtgatatatatacccttacatatcaaagggcagatggccaagctgatagggcttct
gttgggggcccaagttctagtgcatcaaagtctatcaaaggtggctcttccaattcaaac
tcagatacccaagtgcaccgcatgtcacttttagatagcatcttgcaagcagaccttcct
tgtgatttggaaaaatctaatcctacttataatatattggctctactacgtatacttgag
ggtttgaaccagcttgctcctcgtctgagagttcagttagtttctgacaacttttctgag
gggaaaatctcaagcttggatgagttgatgactgctactggtgtcagggttcctgctgaa
gaattcataaatagcaagctcacacctaaattagctcgacaaattcaagatgcccttgct
ctgtgcagtgggagccttccgtcatggtgttatcaattaacaaaagcatgcccattcctg
ttcccttttgagacccggcgacaatacttctattcaactgcttttggattatcccgtgct
ttgtatcgtcttcagcagcagcagggggctgatggtcatggatcagcgaatgaaagagag
gtgagggttggaagattacaacgccagaaagttcgtgtgtcccgaaaccgtattttggat
tctgctgcaaaagtaatggagatgtattctagccagaaggctgtgcttgaagtagaatat
tttggtgaggttggcacagggttgggtcctaccttagagttctacacgcttttgagtcac
gatcttcagaaagtcactcttggaatgtggaggtcaaattcagcagcagagaaaccttca
atggaaattgatggagatgatgacaaaaatggaaaatccaataatgaatctggtactgct
gttgctgcagatcttgtccagactccacttggtttattccctcgtccttggccaccaact
gctagtgcttctgaggggagccaaatatataagaccattgagtatttccggctggttgga
cgggtgatggccaaagctcttcaagatggacggcttttggacctaccactttcaatggca
ttttataagcttgtgcttggtcaagaacttgatctgtatgatattctttcgttcgatgct
gaatttgggaagactttacaagaattgcatgcccttgtttgtcggaaacattatttagaa
tcaatagagagtgatcatgaagccattgcggatttacattttcatgggaccccgatagaa
gatctctgcttggattttactcttccgggttatccagactacattttgaagccaggagat
gaaactgtcgatatcaataacttggaggaattcatatccttggtagttgacgcaactgtc
aagactgggattacgcgacaaatggaagcatttagagatgggttcaatcaggtttttgac
atctcctcattgcaaatattcactccacaagaattggattatttgctttgcggtcgcaga
gagttgtgggagcctgatacacttgttgatcatataaaatttgatcatggatacactgcc
aagagtccagccattgttaacctgcttgagattatgggagagttcacaccggatcagcag
cgtgcattctgccagtttgttactggggcacccaggctaccacctggaggtctggctgtc
ctaaacccaaaattaaccattgtgagaaagcattcttcatctgcagggaatgcaatgcca
aatggaactggaccttcagaatcagctgatgatgacttgcctagtgtcatgacttgtgct
aattacctaaagcttcctccttactctaccaaggaagttatgtacaagaaattgctgtac
gcaatcagtgaagggcagggatcttttgatctgtcatga
DBGET
integrated database retrieval system
