Populus nigra (Lombardy poplar): 133679711
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Entry
133679711 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133679711
04121 Ubiquitin system [BR:
pnz04121
]
133679711
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133679711
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133679711
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133679711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_16
Zn_ribbon_FGT1_2
Rad50_zn_hook
zf-RING_5
zf-RING-like
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
133679711
NCBI-ProteinID:
XP_061958368
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All DBs
Position
19:complement(5154295..5155816)
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AA seq
341 aa
AA seq
DB search
MASTTTTTSYWCYRCSRFVAVSPHNEDEEHSHTSNITCPHCDGGFVEEIQSNSTSDIRQN
RSRVSNLTRNRRNAGDRSSFNPVIVLRGTTPAAAAEDNEDGSAYEFYYDDGIGTGLRPVP
EMMSEFLMGSGFDRLLDQLSQIEINSLGRSVPNPPASKVVVESMPSVEINETHVISETYC
AVCKEAFEIGNEAREMPCKHIYHSDCIFPWLAMRNSCPVCRHELPVENSREEEVEGELVG
LTVWRLPGGGFAVGRFSGGRRGGEREFPGVFTEMDGGGNGGLNGTSRPSRDWDSWVTRRS
RRRESTSGTGGFRRVFRGMASFLRRIRPNSSSRMRDGSEEP
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgacgacgacgacgacgtcgtattggtgttacagatgctcacgcttcgtcgcc
gtttcacctcacaacgaagacgaagaacacagccacacaagcaacatcacgtgtcctcac
tgcgacggtgggttcgtcgaagagatccaatccaactccacctctgatatccgtcaaaac
cgtagccgggtttccaaccttacccgaaaccgccgcaacgccggcgaccggtcttcgttt
aacccagtgatcgtcctccgcggaaccacccctgccgctgctgctgaagacaacgaagat
ggaagcgcctacgagttctactatgacgatggaatcggtacgggtctccgacccgtaccg
gagatgatgtctgagtttttaatgggttcaggttttgaccgtttactagaccagttatca
cagatagagataaacagtttaggccggtcggttcctaacccgccggcatcgaaagtcgtg
gttgaatcaatgccgagtgtagaaataaacgaaacgcatgtgatttcggagacgtactgt
gcagtgtgtaaagaggcgttcgagataggaaacgaggctcgtgagatgccttgtaagcat
atttatcattctgattgcatttttccttggcttgcgatgcgaaactcttgtcccgtttgc
aggcacgagttgcctgtggagaattccagagaggaggaggtggaaggggagcttgtgggg
ctaactgtatggaggttgcctggtggtgggtttgctgttgggaggtttagtgggggaagg
agaggtggagagagagagtttccgggtgtttttacggagatggatggtggtgggaatggt
gggcttaacgggaccagtaggccgtctcgtgattgggattcttgggtgactaggaggagt
agaagaagagagagtactagtggtactgggggttttaggagagtttttcgtggtatggct
tcgtttttaaggaggattaggcctaattcgtcgtcaagaatgcgtgatggatctgaagaa
ccttga
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