Populus nigra (Lombardy poplar): 133679758
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Entry
133679758 CDS
T10372
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133679758
09123 Folding, sorting and degradation
03018 RNA degradation
133679758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133679758
03041 Spliceosome [BR:
pnz03041
]
133679758
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133679758
mRNA degradation factors
5'-3' decay
Lsm complex
133679758
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133679758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
133679758
NCBI-ProteinID:
XP_061958428
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Position
19:complement(7198176..7201265)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaggaaagaaacagtattggatttggctaagtttgtggacaagggtgttcaa
gtcaagctcactggtggtagacaagtgactgggactttgaagggatacgatcaattgcta
aaccttgtcctggatgaagcagtagaatttctaagagatgctgatgatccactaaagacc
actgaccagacaaggcgccttggcctgattgtttgcaggggaactgcagtgatgctggtg
tcaccaactgatggtacagatgagattgccaacccttttgtccagccagatggagcctag
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