Populus nigra (Lombardy poplar): 133679868
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Entry
133679868 CDS
T10372
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133679868
09123 Folding, sorting and degradation
03018 RNA degradation
133679868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133679868
03041 Spliceosome [BR:
pnz03041
]
133679868
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133679868
mRNA cycle factors
Stress granule specific factors
133679868
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Complex C specific factors
133679868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_10
RRM_5
RRM_3
RRM_Nup35
RBD_DEAH11
RRM_RdRP1_2
RRM_7
RRM_MARF1
PABC_AtC3H46
BRAP2
Motif
Other DBs
NCBI-GeneID:
133679868
NCBI-ProteinID:
XP_061958570
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All DBs
Position
19:9531370..9535514
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AA seq
643 aa
AA seq
DB search
MAQVQVPAQPQNVNGGATNPNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDL
TSRRSLGYGYVNYSNPQDAARALEVLNFTLVNGSPIRVMYSHRDPSVRKSGAGNIFIKNL
DKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLND
KQVYVGPFLRKQERETATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGD
GKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEA
ADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEA
SRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGRMPMYPPTGPG
LGQQIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRA
GTGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMGGMPMRDAA
LSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHL
LESPEALKSKVNEAMEVLRTVQQQATGTADQLASLSLNDNLGP
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggttcaagtaccggcgcagccacagaatgtgaatggaggggctactaaccca
aattttgtaacgacatcgctttatgtgggtgatttggaagcgaatgtgactgattcccag
ttgtatgatctgtttaatcaagtgggtcaagtggtttccgtcagggtttgcagggacctg
acgagccgcaggtcccttggttatggttatgttaactacagcaatcctcaagatgctgca
agggcattggaagtgctgaatttcactttagtgaatggaagtccaatcagggttatgtat
tcccatcgtgacccgagtgttcgcaaaagtggggcaggaaatatatttattaagaatttg
gacaaggcaattgaccacaaagcactgcatgacacattttcagtatttgggaacattctc
tcttgcaaggttgctactgacccctctggccagtcaaaaggctatgggtttgtgcagttt
gacagcgaggaagctgctcaaaaagcgattgagaaactgaatggcatgctgttgaatgat
aagcaagtttacgtgggacctttccttcgcaagcaggaaagggagactgccactgacaag
acaagattcaacaatgtttttgtgaagaatctatctgaaacgacagctgaggaggatttg
aacaaagcttttggtgaatttggaactatcaccagtgttgtggtgatgagggatggtgat
ggaaagtctaggtgctttggatttgtgaactttgagaatgcagatgatgctgctaaagca
gcggaggctcttaatggaaagaaatttgatgacaaggaatggtttgttgggaaagctcag
aaaaaatatgaaagggaagtcgagttaaaacaacggtttgagcagagcatgaaggaagca
gctgacaaatttcagggtgcaaatttgtacattaaaaatttagatgatagcataggtgat
gagaaaattaaggagctgttttctccatttggtacaatcacgtcttgcaaggttatgcga
gacccgaatggaataagcagaggatcagggtttgttgcattctcaactcctgaagaggca
tctagagctctattggagatgaacgggaaaatggttgctagcaaacctctatatgttgcc
cttgcacaaagaaaggaagatagaagagccaggttgcaggctcagttttctcaaatgcga
ccagttgcaatggcaccttcagttggtcgtatgccaatgtacccccctactggtcccggt
cttggacaacaaatattctatggacaaggcccacctgctatcatgccaccccagcctgga
tttgggtatcaacagcagctagtgcctggtatgaggcctggaggggctcctatgccaaat
ttctttgtgccaatggttcagcaggggcagcaaggtcagcgtcctggtggtcgacgggca
ggtactggccagcaatcccagcagccagtcccgctaatgcagcagcagatgcttcctagg
ggacgtgtctatcgctaccctccaggacgcggattgcctgatgttccaatgactggtgtt
gctggaggcatgctttctgttccatatgacatgggtggtatgccaatgcgtgatgcagcg
ttgtcccagccaattcccataggggctttggctactgcacttgcaaatgctactccagat
cagcagagaacgatgctgggagaaaatctgtaccctcttgtggagcagctggaacctgaa
gccgcagctaaagtgacaggcatgcttctggagatggatcagactgaggttctgcacttg
cttgagtcaccagaagctctcaaatcgaaggttaatgaggcgatggaggttctaaggact
gttcagcagcaggccactggcacagctgatcaactagcctctttgtcactgaacgacaat
cttgggccctag
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integrated database retrieval system
