Populus nigra (Lombardy poplar): 133679946
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Entry
133679946 CDS
T10372
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133679946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133679946
03110 Chaperones and folding catalysts [BR:
pnz03110
]
133679946
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133679946
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133679946
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
133679946
Messenger RNA biogenesis [BR:
pnz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
133679946
Chaperones and folding catalysts [BR:
pnz03110
]
Heat shock proteins
HSP60 / Chaperonin
133679946
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
133679946
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133679946
Exosomal proteins of other body fluids (saliva and urine)
133679946
Exosomal proteins of breast cancer cells
133679946
Exosomal proteins of colorectal cancer cells
133679946
Exosomal proteins of bladder cancer cells
133679946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
133679946
NCBI-ProteinID:
XP_061958672
LinkDB
All DBs
Position
19:complement(2452016..2456015)
Genome browser
AA seq
586 aa
AA seq
DB search
MATSNALSTASILCSPKQGGLRRKGNQQHNSRLNFGQSTRRFAVRANAKDIAFDQDSRAA
LQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIRE
VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVQGLVEELEKRAR
PVEGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID
RGYISPQFVTNPEKLICEFENARVLVTDQKISAIKDIIPLLEKTTQLRSPLLIIAEDVTG
EALATLVVNKLRGILNVSAIKAPSFGERRKAVLQDIAILTGAEFQASDLGLSIENTSIEQ
LGLARKVTISKDSTTIIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGV
AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTHVPAIKEKIKDA
DERLGADIVQKALVAPASLIAQNAGIEGEVVVEKLKESEWEVGYNAMTDKYENLVEAGVI
DPAKVTRCALQNSASVAGMVLTTQAIVVEKPKPKTPAAASPQGLTV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatctaatgctctctccacagcttccattctttgctctcctaaacagggaggg
ttgaggaggaaagggaatcagcaacacaactcaaggctgaattttgggcaatcaaccaga
agattcgcggtgcgagcaaatgcaaaggatattgcttttgatcaggactcacgggctgct
ctccaatccggcattgataagcttgctgatgctgttgggcttactcttggtcctaggggt
agaaatgttgtcttagatgaatttggaagtccaaaggtagttaatgatggggtaacaatt
gcgcgagctattgagctacctgatcccatggaaaatgctggtgcagcactcatcagggag
gttgcaagtaaaactaatgactctgctggtgatggaacgacaactgcatcagttcttgct
cgggaaataatcaaattaggacttttgagtgtcacgtctggtgcaaatccagtttctatt
aaaaagggaatcgataaaactgtgcaaggcttggtagaagagttagagaagagggctaga
cctgttgaaggccgtgatgacattaaagctgttgcgacaatttctgctggaaatgatgaa
ctcattggcacgatgattgctgatgcaattgacaaggttgggcctgatggtgttttatca
attgagtcatcatcttcctttgagaccacagttgaagttgaagaaggaatggagatagac
agaggttatatctctcctcaatttgttacaaatccggagaagttaatttgtgaatttgag
aatgctagagtgctggttacagatcaaaagatttctgcaatcaaagacataattcccttg
ctagaaaaaactactcaattgagatctcctttgcttataattgctgaggatgtaacaggt
gaggctttggctacccttgtggtgaacaaactgcgtggtatccttaatgtttccgctatc
aaggctcctagttttggtgaaaggaggaaagctgtgctgcaagacattgccattttaaca
ggagctgagttccaagccagcgatcttggtttaagcattgaaaacacatcaattgagcag
cttggtttggccaggaaggttacaatcagcaaggattccaccaccatcattgctgatgct
gcatcgaaggatgagttgcaagctaggattgcacagctgaaaaaagagctgtccgagact
gattctgtgtatgactcggagaaactggctgaaagaattgccaaattgtctggtggggtt
gctgttatcaaagtgggtgctgcaacggagactgagcttgaggatcgcaaactccgcatt
gaggatgccaagaatgcaacttttgctgccatagaagaaggaattgtgcctggtggtggt
gctgctttggttcatctctcaacccatgttcctgcaatcaaggaaaaaattaaagatgca
gatgaacggttaggtgctgacatcgtgcagaaggcactggtagcacccgcatcgttgata
gctcaaaatgctggaattgaaggtgaggtggttgttgagaagctaaaggaaagtgaatgg
gaggtgggctacaatgccatgacagacaagtatgagaatcttgtggaggctggagtcatt
gatccagcaaaggtgaccagatgtgctttgcagaattctgcatctgtagctggaatggtc
ctgaccacccaggccattgttgtagaaaagcccaagcccaagacacctgcagctgcctct
cctcaaggtcttactgtgtaa
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