Populus nigra (Lombardy poplar): 133680012
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Entry
133680012 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133680012
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133680012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnz03000
]
133680012
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133680012
04121 Ubiquitin system [BR:
pnz04121
]
133680012
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133680012
Transcription factors [BR:
pnz03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133680012
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133680012
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133680012
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133680012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nab2-like_zf-CCCH_
Baculo_IE-1
CLCA
Rtf2
Motif
Other DBs
NCBI-GeneID:
133680012
NCBI-ProteinID:
XP_061958775
LinkDB
All DBs
Position
19:4404753..4413121
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AA seq
1041 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRLPY
DKKKIVGTAGDCERLVAEINMERKKSHKAKTKPSEGRKQLSSVRVIQRNLVYIVGLPLNL
ADEDLLQHKEYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVHG
FVLDGRSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQ
QITGAPSSPLWRSGSMLPPPADDYCNSSSASAAKPVVKNASDNIMSNDQGSPPTGSAGRS
MALPAAASWGTRASNQPQATSLTQSNGPIRLKPDTASGMVAFSSAVASTSQGSMLQNDVG
RKVACDEESQSMNGKGKLDLKSAKHHVSLDSQATAPEKPAIHDATATVTLSNQSSCPLPS
VYNGWDSDVLPNITKSFDGTQQSPESEKEGFAIPNGNFQNSLPDISSMKVDSNIRSELSG
VTRTSSFSDGSMIKSPGNQGLQPTYAEQYCEPTSLAAERTGALEYVVCASSEQLDWRTDQ
PMHAIRSTVSEVEEDILAVERPCLKDPEEASHDTYLPNSAHLPHIPNHYRSSSLQHTESF
GAASLNSDSQYADTRVSDLSLLHSSSNCVTSNGYPEKSVSSSACSDRNIERSFSLLNGVE
GKNMGRSLGDADSNGALDVGESSIISNILSLDLDAWDNSLTSPQNLAKLLSETDKQPSSL
KMSSNWKVQNNNNQSRFSFARQEELRSQTLGVDPSLNVFGKLSNNYTSNQDFGENRNSYL
EKLGIGNSFSSSIFEEPENFTFSPSTFSSNRPPISRSQISAPPGFSVPSRAPPPGFSSHE
RMEQSFDIISGNHLLDSSSFLRNSFQSPPTGNAGSAGEIEFMDPAILAVGKGRLQGGLNN
LGVDMRSNFPQQLHHFDNEARLQLLMQRSLPPHQNTRYADTGDSFSSLNDSFGISSRLVD
QSQISGLSPYAQLSLQQSRNGLMPNGRWDGWNEIQGGNSMHMTELLRNERVGFNKFYTSG
YEDSKFRMPSSDDLYNRTFEM
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgagggagaaaggacttgcccactttgcgctgaggagatggatttaactgat
cagcaattaaagccttgcaaatgtggttatgagatatgtgtttggtgctggcatcacata
atggacatggcggagaaggatgacacagaagggaggtgtccagcatgccgccttccttat
gacaagaagaagattgtggggacggctggagactgcgagagattggtggctgaaatcaat
atggagcgaaagaagtcacataaggcaaagacaaaaccatctgaaggaaggaagcaactg
agtagtgttagagtgatccaacggaatctggtgtacatagttgggttgcctcttaatctg
gcagatgaagatcttctgcagcacaaagagtattttggtcaatacgggaaggttctaaaa
gtctctatgtctcgaacagcagctggtgttattcaacagtttccaaacaatacttgtagt
gtatatataacttactccaaggaggaagaagctattcggtgtattcagtctgtacatggt
tttgtcttggatggtagatctttaaaggcgtgctttggaactacaaagtattgtcatgca
tggctgagaaatgtgccttgcacaaatcctgattgtctatatttgcacgagattggttct
caagaagatagttttacaaaagatgagatcatatcagcatacacaaggagtagagttcaa
caaattaccggtgcaccaagcagtccgttgtggcgttcagggagtatgttgcctccacct
gcagatgattactgtaacagtagttctgcttctgcagcaaaaccagttgtgaaaaatgca
tcagataatataatgagtaatgaccaaggttcacctccaactggaagcgctggtagatct
atggcactccctgctgcagcgtcatggggaacgcgtgcttcaaaccagcctcaagcaaca
agcttgacacagtctaatggaccaataaggcttaaaccagacacagctagtggcatggta
gctttctcttctgcagttgcaagcacaagtcagggttctatgttgcagaatgatgtgggt
agaaaggttgcatgtgatgaagaaagccaatctatgaatggaaaaggtaaattagatttg
aaatctgcaaaacaccatgtgagcttggatagccaagccactgctcccgagaaaccagct
atacatgatgctactgctactgtaactttaagtaaccagtcttcttgtccactgccatcc
gtgtacaatggctgggactcagatgtgctgccaaatattacaaagtcctttgatggaact
caacaatctcctgaatctgaaaaggaaggctttgctatacctaatggaaactttcagaac
tcattgcctgacatctcttcaatgaaggttgatagtaatatcagaagtgaactttctggt
gtaactagaactagttcattttcagatgggagtatgattaaatcacctggaaatcaagga
ttgcagcctacatatgctgaacaatactgtgaacctacttcactagcagcagagagaact
ggtgcattagaatatgtggtttgtgcttcaagtgaacaattggattggagaacagatcaa
ccgatgcatgcaattagaagcactgtttctgaagtagaggaggatatattagcggttgag
agaccatgtctcaaggacccagaggaagcgagccatgatacttatttgccgaattcagct
catttacctcatataccaaatcattatagatctagttctttgcaacacactgagtctttt
ggggctgctagtttaaattccgattctcaatatgcagatactagagtcagtgatctttca
cttctacattcatctagtaactgtgtcacatcaaatggttaccctgagaaatcagtcagc
agttctgcttgttcagatagaaacatagagcgctcattttctctcttgaatggagtggaa
gggaagaacatgggcagatcactgggtgatgctgatagcaatggtgctctggatgtgggt
gagagcagcattatttcaaatatattatcactagatctagatgcctgggataactcgtta
acatcacctcagaatttggccaagttgttgagtgaaacagacaaacagcctagttctctc
aaaatgtcaagtaactggaaggtacaaaataataacaaccagtctagattttcctttgca
agacaggaggagttgagaagtcaaacactgggtgtcgatccatctcttaatgtatttggg
aagttgtcaaataactatacatccaaccaggattttggtgaaaatagaaattcatatttg
gaaaagcttgggattggtaatagtttttcatccagcattttcgaagaacctgaaaatttt
accttcagtccttcaactttctcttctaacaggcctcctatttcaagatctcaaatttct
gccccacctggattctctgtgccaagcagagcaccacctccaggcttttcttctcacgaa
agaatggaacagagttttgacattatatctgggaatcatttgcttgactcatcttccttt
ctgagaaattcatttcagtcaccaccaactggcaatgctggtagtgctggagaaattgaa
tttatggatcctgcaattttggctgttggaaaagggagacttcagggtgggcttaacaat
ctaggagtggacatgagatcaaattttccacaacaattgcatcattttgataacgaggca
agacttcaactactaatgcaaagatctctgcccccacaccagaacacaagatatgctgac
actggggatagcttttcttctctcaatgattcttttggcatttcgtcaaggcttgtggat
caatcacaaatcagtggtttatccccttatgctcagctgtccttacagcagtcgaggaat
gggcttatgccaaatgggcgttgggatggctggaatgagattcagggtggcaacagtatg
catatgacagagcttctcaggaatgagagagtgggattcaataagttttacacttctggt
tatgaggattcaaaatttcggatgcccagctcagatgacttgtataacagaacgtttgag
atgtga
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integrated database retrieval system
