Populus nigra (Lombardy poplar): 133680119
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Entry
133680119 CDS
T10372
Name
(RefSeq) zinc finger CCCH domain-containing protein 24
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnz03016
]
133680119
Transfer RNA biogenesis [BR:
pnz03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
133680119
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
zf-CCCH
RRM_1
Methyltransf_4
Ubie_methyltran
MTS
Methyltransf_15
Methyltransf_11
PCMT
PrmA
Torus
Motif
Other DBs
NCBI-GeneID:
133680119
NCBI-ProteinID:
XP_061958924
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All DBs
Position
19:2924357..2933056
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AA seq
872 aa
AA seq
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MASSSPKNQLSSSSETLNLPTETSLTQTNPMNAQDSPIPPEQQIQPSSNQDDTATTTGEK
RKREKTTTTTTEAEAEAETETDPSLNPFYKTSLCSYFRRHMGASCSHGSACKYAHGEEEL
RPRPDNTWDPTSERAKKAIKLDTTNNNDSKEEDEDEEIMMTDIAADGDGDGGCLDTGLSK
CLVHLPRKWLSDHLRKFLSDQGILFKSAKKKKGMSVGFLSFEDAEQLKKAIEELEGRSIG
NKNIKVADVIPRQFEQKIKSAMAAPQNIPQTMEPALEGENAGISRPSDAIGDGDGNNDNS
TQDGSSSQAKCARDVATPLAHMPYDDQLEHKKNSIMQMLKKLTRNARKACPNGVSLPEWI
LRSREIGGLPCELEGILESPLRNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGVTAVEEP
LGCPNVSSVACKYASIFQEFLQQSGLPIWNRFKNTGFWRQLTVREGRLPRKAADIAIPEA
HISEVMLIVQVSSVGFDDDMITIELRGLAHAFTTGAAGSAPPLPLTALVIQDHQGLSNVA
PADAPLRTLLLPNANGGSEVQATSNVAEARIHDYISNLRFSISPTAFFQVNTLAAEKLYS
LAGDWAGLGPDSLLFDICCGTGTIGLTLADRVGMVVGIEMNASAVSDAHRNAEINGIKNC
RFVCAKAEDVIGSLLKEYLDVPQKEGEQLNASEIRDKEIAIVEVNNAPMDDVLDSSKNPS
HDLGNGEGASGHSENDGQEIQSQLQKSCTSKEGSSSMLHFKNVVAIVDPPRGGLHPTVIK
VLRTHSRVRRLVYISCNPETLVANAIELCTPSPEKVEKGNGNRAWRKMSSAGLARHRVKS
MPISEPFRPVKAVAVDLFPHTSHCEMVMLLER
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtcatctccaaagaaccaactctcttcttcttccgaaaccctaaacctcccg
accgaaacttcccttacccagaccaacccaatgaacgcccaagattcacccatcccccct
gagcaacaaatccagccgtccagcaaccaagatgacaccgccaccacaactggggagaag
cgaaagcgagagaagacaacaacaacaacgacagaagcagaagcagaagcagaaacagaa
acagacccttcactcaatccattctataaaacctcgctctgttcctacttcaggcggcac
atgggggcctcctgtagccacggcagtgcgtgcaagtacgcgcacggcgaagaggagttg
aggccccgcccggataacacctgggatcctacctcggagcgtgccaagaaagctatcaag
ctggacaccaccaataataatgatagtaaggaagaagatgaagatgaggagatcatgatg
actgatattgctgctgacggtgatggtgatgggggttgtttggatactgggcttagtaaa
tgcttggtacatttgccccgcaagtggctttctgatcatttgaggaagtttctaagtgat
caagggattcttttcaaatctgctaagaaaaagaaaggcatgtccgtgggtttcctaagt
ttcgaggatgctgagcaattgaaaaaagcaatcgaggagctggaaggaagatctattgga
aacaagaatataaaggttgccgatgtcattccccgacaatttgagcagaaaatcaaatca
gcaatggctgcccctcaaaacattccgcagacaatggaacctgcattggaaggagaaaat
gctgggatctctagaccttcagatgctattggggatggtgatgggaataatgacaattca
acacaagatggttcaagctctcaggccaaatgtgcccgtgatgtcgcaacacctcttgct
catatgccttatgatgatcaattggagcacaagaagaactctatcatgcaaatgctcaaa
aaacttacaagaaatgcacgcaaagcttgtcctaatggagtttctcttccagaatggatt
ctcagatctagagaaattggtggtcttccatgtgaactagagggtatacttgaatcacca
cttagaaatggatatcgtaataaatgcgagttttctgttggatattctcttcaaggaaaa
cctactgtgggttttatgctaggaaactttagggaaggtgtgacagctgtagaagaacct
cttggctgccccaatgtttctagtgttgcctgcaagtatgcgtcaatctttcaggaattt
ttgcaacaatctggcttgccaatttggaatagatttaagaatactggattctggcgtcaa
ttaacggttcgagaaggaagattaccaaggaaagctgctgatattgcaattcccgaggcc
cacatatcagaggtcatgcttattgttcaggtctcctctgtgggctttgatgatgacatg
ataaccattgaactaagggggttggctcatgcatttaccactggagctgctggaagtgct
ccacctttgcctttaacagccttggttattcaggatcaccaaggactatcaaatgttgca
ccagctgatgctccattgcgcacgctactccttccaaacgcaaatggtggttccgaggtt
caagcaaccagtaatgttgctgaagcaagaattcatgattatataagtaatcttcggttc
tctatatcaccaacagcttttttccaggttaacacccttgctgcagagaaactatactct
cttgctggagattgggctggtctgggtccagatagcttgctatttgatatatgctgtggg
acaggaacaattggcctcactttagcagatcgtgttggtatggttgttggcattgaaatg
aatgcttctgcagtttcagatgctcatcggaatgctgaaattaatggcataaaaaactgt
agatttgtttgtgcaaaggcagaggatgtgattgggtctttattgaaggagtatctagat
gtgcctcagaaagaaggtgaacagctgaatgcatctgaaatcagggataaagaaatagca
attgttgaagttaacaatgctcccatggatgatgtcctagactctagcaagaacccaagc
catgatcttggaaatggtgaaggtgcttctgggcattcagaaaatgatggacaagaaatc
caaagtcaacttcagaagagttgcacatcaaaagaagggagttcttcaatgttgcatttt
aaaaatgttgttgccattgttgatcctccccgtggcgggctgcatcccactgtgattaaa
gttctgagaactcattcacgtgtacggagacttgtttacatttcttgcaatcctgaaacc
ttagtggccaatgctattgagctctgcaccccttctcctgagaaagttgaaaaagggaat
ggaaacagggcatggaggaagatgagcagcgctggtttggcacggcacagagtcaagtct
atgcccatttcagagcctttccgacctgtaaaagccgtggctgttgatcttttcccacat
acctcacattgcgaaatggtgatgcttctggagaggtaa
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