Populus nigra (Lombardy poplar): 133680124
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Entry
133680124 CDS
T10372
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Module
pnz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133680124
Enzymes [BR:
pnz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
133680124
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
ORF6C
FlgE_D2
NosD
Motif
Other DBs
NCBI-GeneID:
133680124
NCBI-ProteinID:
XP_061958929
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All DBs
Position
19:5420437..5422160
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AA seq
380 aa
AA seq
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MGFTRILFLTLLFVWAADVQCQNVRIFNVKKYGAIPDSKTENSKAFLEAWKNACKWNGKA
VVLVPAGTYLLDSVKFEGECKGYMIFKLKGNVMAASKLKDINQWITFKYVNGLTVAGSGT
FDGQGYKSLRLEFIRNGKLQNIRSINSQNAHVSIFASSNLNITNVKLSAPQDSPNTDGIK
ISSSEEIRITRTSISTGDDCVAILNGSKNTHISQVFCGPGHGISVGSMGGNTLIDNKDIV
VGLAVTNSTFTNTSNGLRIKTWASRYEGLASGFTYEDIIMNDVEHPIIIDQQYCPSSSCD
SKTASRIQIRDITYSNIRGTSKSKAAVTLNCSSIVPCKNIVLKDIRLVYTGNEGPASSIC
SNVHGYSYGLQNPPPCFRSA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgggttttactcggattctgttcttgacactgctttttgtttgggctgccgatgttcaa
tgtcaaaacgtcaggattttcaacgtgaagaaatatggtgcaatccctgatagcaagact
gagaatagcaaggcattcttggaagcatggaaaaatgcatgtaaatggaatggaaaggct
gtggttttggtgccagcaggaacatacctgctagactcggtgaaatttgagggcgaatgc
aagggttacatgatatttaagttgaaagggaatgtaatggccgcaagcaaactgaaggat
attaaccaatggattactttcaaatatgttaatggcttaactgtggccggtagtggaacc
ttcgatggccaaggatacaagtcattaaggcttgaattcatcagaaatgggaaactgcaa
aacataagatcaatcaacagccaaaatgcccatgtttccatctttgccagcagcaacttg
aatatcactaatgtcaagttgtctgctcctcaagatagccctaatactgatgggatcaag
attagttcttcagaagaaatcaggattacacgcacatcaatcagtacaggagatgattgt
gttgccatactcaatgggagtaaaaacactcacatttctcaagttttctgtggccctgga
catggaatcagtgttgggagtatgggagggaatacacttattgataataaagacattgtg
gtggggttggccgtgacgaactccacttttaccaataccagcaatggtttaagaatcaaa
acatgggcatctcgctatgaaggtcttgcttctggtttcacttacgaagacatcataatg
aacgacgtcgaacatcccattattattgatcagcaatattgccctagttcttcctgtgat
tccaagactgcttcacgtattcaaatcagggatattacatacagcaacattaggggtact
tcgaagtcgaaggcagcagtgacattaaattgcagcagcattgttccatgcaagaatata
gtgctgaaggatatcagattggtgtatacaggaaatgaaggtcctgcaagttcaatatgt
tctaatgtccatggctactcttatggccttcaaaacccacccccatgctttcgctcggct
tag
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