Populus nigra (Lombardy poplar): 133680151
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Entry
133680151 CDS
T10372
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133680151
09122 Translation
03013 Nucleocytoplasmic transport
133680151
03015 mRNA surveillance pathway
133680151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133680151
03041 Spliceosome [BR:
pnz03041
]
133680151
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
133680151
Spliceosome [BR:
pnz03041
]
Common components
Common spliceosomal components
Cap binding complex
133680151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G
MIF4G_like_2
CLIP1
DUF8221
CCDC39
TPR_MLP1_2
SINE3_TM
Motif
Other DBs
NCBI-GeneID:
133680151
NCBI-ProteinID:
XP_061958953
LinkDB
All DBs
Position
19:complement(6190083..6203733)
Genome browser
AA seq
868 aa
AA seq
DB search
MSSWRSLLLRIGDNCPDYGTSSDVKEHIETCFGVIRRELEHSSNDILSFLLQCAEQLPHK
IPLYGTLVGLLNLENEDFVKQMVEATQANFQDALDFGNCDMIRILMRFLTVMMCSKVLQP
SSLVVVFETLLSSAATTLDEEKGNPSWQARGDFYVSCILSCLPWGGSELVEQVPEEIESV
MVGIEAYLSIRRHNSDTGLSFFEDDDESGRGVVEKDFLEDLWGRIQVLSSNGWKVDSVPR
PHLSFEAQLVAGKSHEFGPINTPEQPEPLSEVSGVLYGKQKHDAELKYPQRIRRLNIFPA
SKIEDMQPIDRFIVEEYLLDVLLFLNGCRKECASFMVGLPVPFRYDYLMAETIFSQLLLL
PLPPFKPIYYTLVIMDLCKALPGAFPGVVAGAVRALFEKIADLDTECQTRLILWFSHHLS
NFQFIWPWEEWAFVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPK
GSPNFIYSIEDGREKTEQHALSAELNNKVKARQTAREIMSWVEESVFPNHGWDVALKVVV
HTLLDIGSKSFTHLITVLERYGQVFARICPDHDKQVMLIAEVSSYWKNNAQMTAIAIDRM
MGYRLISNLAIVRWVFSPANIEQFHTSDRPWEVLRNAISKTYNRISDLRNEISSLKKSVV
SVEEAATKAKTELDAAESKLSLVDGEPVLGDNPARLKRLKANAEKAKEEEVSVHESLEAK
EALLARALDENEALFLSLYKNFSNVLMERLPDPSRARTLRELKSIQADEMTVDLDESSVM
EVDNESGRPNKSQSNGGKESNIYNVGEKEQWCLSTLGYVKAFARQYASEIWAHIEKLDAD
VFTENVHPLFKKAVYSGLSRPINDVSSV
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctggagaagtctccttcttcgaatcggcgacaactgccccgactatggcacc
agctccgacgtcaaagaacacattgaaacttgctttggtgttattcggcgagagttggag
cactcttctaacgatattttatctttccttctccagtgtgctgaacagttgcctcacaag
attcctttatatggaactttggttggcctattgaacttggagaatgaggacttcgtgaag
caaatggtggaggcaactcaagctaattttcaggatgccctagattttggaaactgtgac
atgattcgcattttgatgcgctttcttactgttatgatgtgcagtaaagttctccaacct
tcttctctggtagttgtctttgaaacactcttatcatctgctgccacaacattggatgaa
gagaaaggaaatccttcctggcaagcccgtggggacttttatgtaagctgcattttatcc
tgtcttccatggggaggatcagagctcgttgagcaagttcctgaggagattgagagcgtc
atggttggtatagaagcttatttgagcattagaaggcataattctgataccggattgtct
ttttttgaggatgatgatgaatctgggaggggtgttgttgagaaggatttcttggaagat
ttatggggtcggattcaagtactatctagcaatggatggaaagtagacagtgtacccaga
cctcatctctcgtttgaagctcagctggttgctgggaagtctcatgagttcgggcccatc
aacactcctgagcaacctgagccactttcagaagtctctggggtactttatggtaaacag
aagcatgatgcagagttaaagtatcctcaaaggatacgcaggcttaatatatttcctgcg
agtaaaattgaggatatgcaacccatagatcgcttcattgtggaagagtacttgctggat
gtacttttgttcctcaatggatgtcgaaaggaatgtgcttcgttcatggttggcctgcct
gtaccatttcgttacgactatctcatggcagagacaattttctcacagttacttttgcta
ccattaccacctttcaagccaatatattacacacttgtgataatggacctttgtaaggct
cttcctggagccttccctggagttgtcgctggtgcagttcgtgcactttttgagaaaata
gctgatttagatacggagtgtcagacaaggctcatcctttggttttcacaccatctgtca
aactttcaattcatctggccatgggaagagtgggcttttgttttagacctacctaagtgg
gccccacagcgtgtgtttgttcaagaggtcttggaaagagaagtccgtctgtcatactgg
gacaaagttaagcagagcattgagaatgcacctgctttagaagagttgcttccaccaaag
ggtagtccaaactttatatacagcatcgaagatggtagagaaaaaactgagcagcatgct
ctgtctgcagagctcaacaacaaggtgaaggcaaggcaaactgctcgagaaataatgtca
tgggtagaagaaagtgtatttcctaatcatggttgggacgtcgcccttaaagtggttgta
catacccttcttgatatcggttctaaaagtttcactcatttgatcactgttttggagaga
tatggccaagtatttgcacgaatttgtcctgatcatgataagcaggtcatgctgatagct
gaagttagttcatattggaagaacaatgctcaaatgactgccatagcaattgacagaatg
atgggttatcgactaatttctaatttggcaattgtgagatgggtattttctccagcaaac
attgagcaatttcatacatctgatcgtccatgggaggttcttagaaatgctatcagcaag
acttataaccgtatatctgatctaagaaatgagatatcatctcttaagaagagtgttgta
tcagttgaagaagcagcgacaaaggcaaaaacagagttagatgctgctgagtcaaagctc
tctcttgtggatggtgagcctgttcttggtgataaccctgcgaggttgaagcgcttgaaa
gcaaatgctgaaaaggcaaaagaagaagaggtgtctgtgcatgagtctttggaggccaag
gaggctcttcttgctcgtgcccttgatgaaaatgaggcattgttcctctctttgtacaaa
aacttctcaaatgtgttgatggaacgtctacctgatccatctagagctcgaacattacgg
gaattaaagtcaattcaagcagatgaaatgaccgttgatctcgatgaatcatcagtaatg
gaagtggataatgagagtgggagacccaacaaaagccagtcgaatggaggaaaggaaagc
aacatctataatgtgggagagaaagagcaatggtgtttatcaactctcggctatgtcaag
gcctttgcaagacagtatgcttctgagatatgggctcacatcgagaagctagatgcagat
gtattcacagaaaatgtgcatcctcttttcaagaaagcagtttattctggtttaagtcgg
ccaatcaatgatgtgtcatccgtctaa
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