Populus nigra (Lombardy poplar): 133680359
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Entry
133680359 CDS
T10372
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133680359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133680359
Spliceosome [BR:
pnz03041
]
Complex B
Other components
Prp19-related factors
133680359
Complex C
133680359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
RRM_occluded
zf-CCCH_3
zf-CCCH_4
zf-CCCH_12
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
133680359
NCBI-ProteinID:
XP_061959241
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All DBs
Position
19:5644898..5648473
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AA seq
531 aa
AA seq
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MAHRLLKDPEADGWERSDFPIICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGR
DARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKAQANDTILKLQRTTPYYKRNRAHVCSFFARGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGDMPSLEPPEDESIKTLYVGGLDARIN
EQDLRDQFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAAELSNRLVIKGLRLKLMWGR
PQAPKPESESSDEARQQAAVAHSGMLPRAVVSQQHNHLNPPGTQDQHPPMHYFNIPPPPH
QERAFYPSMDPQRMGALVGSQDGTPNGPAGSGENKSGLEKQLGQHYPYQSMPPPHVQYQQ
QYHQQHYPPYGYMLPVPPYQQYPLPYHTPVPPPQVVQSTQQYQHLVPPPMAAPAESMTSV
PPPQGSRAPSGSTPSGPPPQGSEAPAGSKASGPPSPRPGEPEESKPSGPPP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgttaaaagacccggaggctgacggatgggaacggtctgactttcct
atcatttgcgagtcttgcttaggtgacaatccctatgtcagaatgaccagagctgacttc
gataaggaatgcaagatatgtactcgaccatttacagtgtttaggtggaggcctggtagg
gatgcgagatttaaaaagactgaagtttgccagacttgcagtaagttgaaaaatgtttgt
caagtctgccttttggatctagagtatggtttgcctgttcaagttcgtgatactgctctc
agtataaattccaatgatgctattccaaagagtgatgtgaatagagagtattttgccgag
gagcatgaccgaagggctagggcgggaattgattacgagtcttcatatggaaaggctcaa
gcaaatgatactattctgaagcttcaaagaacaacaccatactacaaaagaaatcgagca
catgtttgtagcttctttgcacgtggtgaatgcacacgaggtgccgaatgcccctatagg
catgagatgcccataactggggagttgtcacagcaaaatattaaagatcgttactatgga
gtgaatgatcctgtggcaatgaagctactcaacaaggctggagacatgccttcattagaa
ccaccagaggatgaaagcattaaaacgctctatgtaggcgggcttgatgcgaggatcaat
gagcaggacctaagggatcaattttatgctcatggcgaaattgaatccataaaaatggtg
cctcaaagagcaattgcttttgtaacctacacaaccagagaaggagcagaaaaggccgca
gcggagctctctaacaggctagtcatcaagggtctgcgtctgaaactgatgtggggtaga
ccgcaagcaccaaaacctgagtcggaaagttctgatgaagcaaggcagcaggcagcagtg
gcccatagtgggatgttgccccgtgcagttgtatctcagcaacacaaccacttaaatcca
cccggcacccaggaccaacatcctccaatgcactacttcaatattcccccaccacctcat
caagaacgagcattttacccgtcaatggatcctcaaagaatgggtgcccttgttggatcc
caagacggtactcctaatgggcctgcaggatcaggtgagaataaatctggattggagaag
cagcttgggcagcactatccatatcaaagtatgccaccacctcacgtgcaataccaacaa
caataccaccaacaacattatccaccatatggttatatgctgccggtgccaccgtatcag
cagtatcctctgccatatcacactcctgtgcctcccccacaggtggtgcaatccacacag
cagtatcagcatcttgtgccaccgccaatggctgcacctgcagagtccatgacctccgtg
cccccacctcagggatcccgagcaccttcagggtccacgccctctggacccccacctcag
ggatctgaagcacctgctgggtctaaagcctccggcccaccatctcctagacctggagaa
cctgaagaatctaaaccctcagggcccccaccttaa
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