Populus nigra (Lombardy poplar): 133680405
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Entry
133680405 CDS
T10372
Name
(RefSeq) autophagy-related protein 2-like isoform X1
KO
K17906
autophagy-related protein 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
133680405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133680405
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133680405
Membrane trafficking [BR:
pnz04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
133680405
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
133680405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG2_CAD
VPS13_N
Motif
Other DBs
NCBI-GeneID:
133680405
NCBI-ProteinID:
XP_061959316
LinkDB
All DBs
Position
19:complement(9742741..9753474)
Genome browser
AA seq
1989 aa
AA seq
DB search
MFSWNFAKSAEAVLSRWAMKRLCKFVLKKKLGKFILGDIDLDQLDVQLAEGTIQLSDLAL
NVDCLNEKFGAAASVMIKEGSIGSLSVKMPWKGKGFQVEVDELELVLAPCLKKRNSPADD
ETSSSSQESRHGHKEVGRFGNDLMETAQKSSFVDVHEGVKTIAKVVKWFLTSFHVKVKKL
IVAYEPYFEKDEKKVGCQETLVLRVPEIECGTCVSEEANLSSDERVENFLGISQLMNFIK
FQGAVLELLKTDGVDNQSCSPCVSDSSFSEQYSGHCRSKPTTTIVTGKKGGFSGNLKLSI
PWKNGSLDIHKLDAEVCVDPVELRLQPSTIKWFLLSWETYKNIDQDGRGDAHYKSTEPVY
FNSSSHFHSSLSIPGVVANDKVSPVRGSLTSAFSSFTGKESVSEAMLPGSHLISDWVPNS
IQNEKDGIQEELDLGASVDQFFECLDGMRSSQSALGSSGMWNWTCSVFSALTAASSLASG
SFQIPSEDQHVQTTLKATLAGVSVLLSFQDEDQEYLYGQKSEQNTVGLEIRCLSAECKDI
FVVLQVCPQEMRFEGTVKCIEVIDYLYDKNDAMNSHSTEFSSDSNSQTVLIQNLQSEVQG
VLPPFPHSDELSTLIAPGVPFGNATKMKLLGTSGVTRCQFTVYSDSSDGNFTGTKSFSLQ
LPLLIFWVNFASVNVILNLLKDAEKSVERSIQRNGFPPVNKKHESSHGNMKKGSSSRVST
LTSTENLQGSISVLKARVILCFPFVSGGDIGGHSPWNQFIAVDISSPLILESPTSNSSSW
KRHAPRTICSLHLNVSNLKVYLVNPACNDDGTTLSTLMPRYRFCAQKIVSVSNRADCLCT
ISMLWQEDPVTGPWIAEKAKSLATSEESRSRKKIKVKGYEFASATAAKDLGDINLQTREE
LILSSAFFLHVHLLPVVVDLSSSQYRNLHCLLDQMINGLSGMACDVDGVRELSPASQTSI
LVKCESVDFSIRPDIKDDIKSSLQSELPGSWHCLKLKIQKFDILSVSNIGGIRGANFFWL
AHGEGKLWGSITGVPDQEFLLISCSNSTMKRGDGGGSNALSSSLAGSEIIHIWDPKSSHD
FTSVSVRCATVIAVGGRLDWLDAISSFFILPSPKVEKANNENLAKGDLNAPSETSFILKL
VDIGISYEPYLKKSVVRDLHSESGSSYSIEETGEPHIACLLAASLFSLSNTTTEDSIDSD
YKIRVQDVGLLLGAAHENIGGTHSVEYLHKMGYVRVAHEALVEAILRTDCKNGLLWEVEC
TKSHIYVETCHDTTRGLMCLAAQFQQLYAPDLEESVVHLQNRWNGVCQAQERNEFNDEGR
IFNHDCAPSTSQVHAPTADTKSNLGVVGLMDEICEDAFHLHEIRACRFDSSGSEIRVSLD
ESLLGEACSLSVETPDFFSNDLSYDWPVPLIGLESNQTTFLQSGSFPEFIEGYCVSDLRP
LSELSMGRQSPPEKLKCVSKNFGNTDHGRGNGGWYGDAPLSIVENHISGASSEASVNQVL
EDQLPTLHSARSDDFGKATGRVLFKNIDVSWRMYAGSDWQAYKKNSDPCSHTCGRDTTVC
LELALSGMQFQYNVFPVGGVCASKLCLTVQDFHLSDKSKTAPWKQILGYYHSKDHPREST
SKAFKLDLEAVRPDPLIPLEEYRLRITLLPLLLHLHQSQLDFLISFFGPKSFSAGQSSDQ
DQNSDGVKTSATNSCNLAGHTIANEALLPFFQKFEIWPIILRVDYSPHHVDLAALSSGKY
VELVNLVPWKGVELQLKHVHAVGVYGWGSVCETIIGEWLVEISRNQMHKILQGLPTIRSL
VAVGSGAAKLVSLPVESYRKDHKIIKGMQRGTSAFLKSISLEAVGFGVHLAAGAHDILLQ
AEYILTNIPSPPVSWSVQAKTKENVRCNQPKDAQQGIQHAYESLSDGLGKSASALVQTPL
KKYQHGASTVTALATAVRAVPAAAIAPVSACAGAMHYALLGLRNSLDPEHKKESMEKYLG
SSKPNDWDC
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgtggaattttgcgaaatcggcggaggcggtactgtcgcggtgggcgatgaaa
aggctgtgcaagtttgtattgaagaagaaattagggaagtttatattaggagatattgat
cttgaccagctcgatgttcaactcgctgaaggcactattcaactcagtgatcttgctctc
aatgtcgattgtcttaatgaaaagtttggggcagcggcatcagtgatgataaaagaaggg
tcaattggctcattgtcggtcaaaatgccatggaagggtaaaggttttcaggttgaggtg
gatgagcttgagcttgtacttgcaccctgtttgaagaaaaggaattcaccagctgacgac
gagactagtagttctagtcaagagagtagacatgggcacaaggaggtggggaggtttggg
aatgatttgatggaaactgctcaaaaatctagttttgttgacgttcatgaaggcgtcaag
acaatcgcaaaagtggtgaagtggtttttgactagtttccatgtaaaggttaagaagttg
attgttgcatatgagccatatttcgagaaggatgaaaagaaggttgggtgtcaagaaact
ttggtcctcagagtacctgaaatagaatgtggaacctgtgtttctgaagaagctaactta
agttctgatgaaagagttgagaactttctaggcattagtcagttaatgaattttattaag
tttcaaggagcagtgcttgaacttctcaaaacagatggtgttgacaatcaaagttgcagt
ccatgtgtgtcagattcaagtttcagtgagcaatattcagggcactgccgatcaaaacct
acaactactattgtgactgggaaaaaaggtggattttcagggaatttaaagctaagtatt
ccttggaagaatggttcattagacattcacaaattagatgcagaggtttgtgtggatcct
gtagaattaagacttcaaccaagcacaatcaagtggttcctactttcatgggaaacttat
aagaatattgatcaagatggcaggggggatgcacattataaatcaaccgaaccagtctac
tttaattcttcttctcatttccattcttcgttatctatccctggtgtggttgctaatgat
aaagtgagccctgttcgtggtagccttacatctgccttttcttctttcaccgggaaagaa
tcagttagtgaagcaatgctacctggctcacatcttatatctgactgggtgccaaattct
attcaaaacgagaaagatggtatccaagaagaattagaccttggagcaagtgtggaccaa
tttttcgaatgtttagatggaatgagaagttcacaatcagctctgggaagcagcgggatg
tggaactggacatgttctgttttcagtgcattaactgcagcatccagccttgcttctgga
tcttttcaaatcccttctgaagaccagcatgttcaaaccacccttaaagcgactttggct
ggagtttctgtcttgctatcctttcaggatgaagatcaggaatatctgtatggtcaaaag
agtgaacagaatactgttggactggagattcgttgtcttagtgcagaatgcaaagatatt
tttgttgttttgcaggtttgtcctcaagaaatgaggtttgaaggaacagtgaagtgtatt
gaggttattgattacttgtacgataaaaatgatgccatgaatagtcactcgacggagttt
agtagtgatagcaacagtcaaactgttttgatccagaatctgcaatctgaagtccaaggt
gttctccctccatttcctcattcagatgaattaagtacattaattgcaccaggagttcca
tttggaaatgcgaccaagatgaaactgcttggtacctcaggtgtcactcggtgccaattt
actgtatattctgattcgtcagatggaaattttactggaacaaagtcattttcattgcaa
ctgccgttgttaatattctgggtgaactttgcttcagtaaacgtgatactgaatcttctg
aaggatgctgaaaaatctgttgaaaggagtatccagaggaatggatttccacctgtcaat
aagaagcatgaatcatctcatggaaatatgaaaaaaggttcaagttctagggtttcaaca
ttgacctctacagaaaatttgcaaggtagtatatcagtccttaaggcgagggtaatacta
tgtttcccatttgtaagtggtggagatattggaggccactctccctggaatcaatttatt
gctgttgatatttcttcaccgttgatcttggaaagcccaacatcgaattccagttcgtgg
aaaaggcatgcaccaaggaccatatgttctttgcatttgaatgttagtaatctcaaggtt
tacttggtcaatccagcatgtaatgatgatggaactaccttgtctactttgatgccaagg
tatagattttgtgcacagaagattgtgtctgtgagtaatagagctgattgcctatgtaca
attagtatgctttggcaggaagaccccgtgactggtccttggatagctgagaaagccaag
tctctggcaacttcagaggaatccaggagcaggaaaaaaatcaaggtgaaaggatatgaa
tttgctagtgcaactgctgcaaaggatctaggagacataaatttgcaaaccagagaagag
ttaattttgagctctgcattcttcttgcatgttcatctgcttcctgttgtggtggatctt
agcagttctcagtatagaaatttgcattgccttctagatcagatgattaatggattatca
ggcatggcctgcgatgtagatggtgttagggaattgtctccagccagtcaaacatcaatt
cttgtgaagtgtgaatcagtagatttttcaattagaccagatataaaggatgacataaaa
agttcattgcagagtgaacttcctggatcatggcattgtttaaaactgaaaattcaaaaa
tttgatattctgtccgtctcaaatattggaggtatcaggggtgccaatttcttttggcta
gcccatggagaaggtaaattatggggttccatcaccggagttccagatcaagagtttctt
ctgatttcttgtagcaactccactatgaaacgtggagatggaggaggttccaatgcatta
tcttctagcttggctggttctgaaattatacacatatgggatccaaagagctcacatgat
tttacatctgttagtgtcagatgtgccacagttattgctgttggtggtcgcttggattgg
ctggatgcaatatcctccttcttcattttgccctctcctaaagtggagaaggcaaacaat
gaaaatctggcaaagggggatttgaatgccccttctgaaacttctttcattctaaagttg
gttgatattggaataagttatgagccttacttgaagaagtcagtggttagggatcttcat
tccgagtctggctcctcatattccatagaagaaacaggtgagccgcacattgcttgtcta
ttagctgcatctttgttttctctttccaatacaacaacggaagattctattgatagtgat
tacaaaattagagtgcaagatgtagggcttcttcttggtgcagcacatgagaatattggt
ggcactcatagtgtggaatatcttcataagatgggttatgtgagagttgcccatgaggcc
ctggttgaagcaattttgagaactgactgtaagaatggccttctctgggaggtagaatgc
acaaaatcccatatttatgtggaaacttgccatgacactactcgcggtctcatgtgcctg
gctgctcaattccaacagctctatgcccctgacttggaggaatcagttgtgcacttgcag
aataggtggaatggtgtttgtcaggcccaagagagaaacgagttcaatgatgaaggtcgg
attttcaatcatgattgtgcgccttcgacttcccaagttcatgcccctactgcagataca
aagagtaaccttggggtggttggcttaatggatgagatatgtgaagatgcatttcacttg
catgagattcgggcatgccggtttgattccagtggatcagaaattcgtgtttcacttgat
gaaagtctcctcggagaagcttgcagcctaagtgttgaaactcctgacttcttctcgaat
gatctctcttatgattggccagtgcctttaataggcctggaaagtaatcaaaccacattt
ctacagagtggttctttcccagaatttatagaaggctattgtgtgtctgatttacgccct
ttgtcagaattatccatgggcaggcagtcaccacctgaaaaacttaaatgcgtatccaag
aattttggcaatacagatcatggaagaggaaatggtggatggtatggggatgcccctttg
agcattgttgaaaatcacatttctggagcaagtagtgaagctagtgtgaatcaggttttg
gaagaccagcttccaactttgcattctgcaagatctgatgattttgggaaggctacagga
cgtgtactttttaagaacattgatgtgagctggagaatgtatgctggttctgactggcag
gcatataaaaagaatagtgatccatgtagtcatacttgtggaagggatacaactgtttgt
ctggagcttgcattgtctggaatgcaatttcaatacaatgtcttcccagttggtggagta
tgtgcatctaagctttgtctcacagttcaagattttcatctttctgataagagtaaaact
gcaccgtggaaacagatacttggatattatcattcaaaagatcatcctagggaatccact
tcaaaagcattcaagctggacttggaagctgtcagaccagatcctctaatccctcttgag
gaataccggttacgcataactctccttcctttgctattgcatcttcatcaaagccaactc
gattttctcattagcttttttgggcccaaaagcttttcagcaggccagtcttcggatcaa
gatcaaaactcagatggtgtaaagacttctgcaacaaatagctgtaatcttgcaggacat
acaattgcaaatgaagcattgcttcccttttttcagaagtttgaaatatggcccattatt
cttcgagttgactacagtccccatcatgttgatctagcagcattgagcagtgggaagtat
gtggaacttgtgaaccttgtcccctggaagggggttgaactacagctaaaacatgttcat
gccgttggtgtctatggctggggcagtgtatgtgaaacaattataggggagtggttggtg
gagatctctcgaaatcagatgcataaaatcttgcaaggccttcctaccatccggtccctg
gttgctgttggttctggtgctgcaaagcttgtttccttgcctgttgagagctacaggaag
gatcataaaataatcaagggaatgcaaagaggtacaagtgcatttctaaaaagtatatcg
cttgaagctgttggatttggggtgcatttggcagctggggctcatgatattttgctccaa
gcagagtatattcttacaaatataccttctcctcctgtgtcatggtctgtacaagccaaa
actaaagaaaatgtaagatgcaatcagccaaaagatgcccagcaaggaattcaacatgca
tatgagagtctcagtgatggcctgggaaagtccgcttctgctttagtgcagactccattg
aaaaaatatcagcatggagccagcacagtaactgccctggcaactgctgtacgggctgtt
cctgctgctgctatagctcctgtttctgcttgtgcaggtgcaatgcattatgctcttctt
ggccttagaaatagccttgaccctgaacacaaaaaagagtccatggagaagtatctgggt
tcttcaaagccaaatgactgggattgttga
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