KEGG   Populus nigra (Lombardy poplar): 133680410
Entry
133680410         CDS       T10372                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03030  DNA replication
pnz03410  Base excision repair
pnz03420  Nucleotide excision repair
pnz03430  Mismatch repair
Brite
Enzymes [BR:pnz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     133680410
    6.5.1.6  DNA ligase (ATP or NAD+)
     133680410
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     133680410
DNA replication proteins [BR:pnz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    133680410
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     133680410
DNA repair and recombination proteins [BR:pnz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     133680410
   NER (nucleotide excision repair)
    Other NER factors
     133680410
   MMR (mismatch excision repair)
    Other MMR factors
     133680410
SSDB
Other DBs
NCBI-GeneID: 133680410
NCBI-ProteinID: XP_061959323
LinkDB
Position
19:1893491..1910612
AA seq 801 aa
MLRLRPCVSIRSIYSTRHSKLLSPLIPSLFFSKSPSFLKTHTLYLNPNSTMSSSRPSAFD
ALMSNARAAASAKKKTQPQPQLKSSSPKKRKTLDHPQNPDKTLNSVQNPQTDESKKLINT
PDSSNEPKSEPNPRSDSLLKVNESNKLRVEDKNTELKSKTVLLKKKAGDFKPEMVANWEK
GERVPFIFVSLAFDLIANETGRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVAPAHE
GVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPLTITK
VFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAAL
GQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFT
PGVPVGPMLAKPTKGVSEIVTKFQDMEFTCEYKYDGERAQIHYLENGSVEIYSRNSERNT
GKFPDVVAVISRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNV
CIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAV
DASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVY
GAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIKPDVW
FEPKEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQVAE
MYNAQKHNHQNNQDDNDDDDD
NT seq 2406 nt   +upstreamnt  +downstreamnt
atgctcaggctccgtccatgtgtctctatacgctccatttactccacgcgccactccaaa
ctgctctctcctctcattccctctctcttcttctctaaatccccatcatttctaaaaacc
cacactctctatctaaaccctaattccacaatgtcctcctctcgcccctccgccttcgat
gctctcatgtccaacgcacgtgccgccgcctccgctaagaaaaaaacccaaccccaaccc
caattaaaatccagctcccccaaaaaacgcaaaaccctagaccatcctcaaaaccctgat
aaaaccctcaattccgtacaaaatcctcaaactgatgaatctaaaaagctaattaacact
ccagattcatcgaatgagcctaaatcagaaccaaatcctaggtctgatagcttattaaaa
gtcaatgaatcgaataaactgagagttgaggataaaaatacggagttgaagagcaagact
gtgttgttaaagaagaaagccggggattttaagccggagatggtggctaattgggagaaa
ggagagagggttccgtttatatttgtttctttggcttttgatttgatagcgaacgagaca
gggaggattgtgattactgatattgtttgtaatatgttgaggactgtaatggatactact
ccggaggatttggtggctgtggtttatttgttagctaataaggttgcccctgcgcatgag
ggagtggaacttgggattggggaagctttgattattaaggcgctggcggaggcgtgtggg
aggaaagagaaggaggttaagaagcagtataaggacttgggagatttgggccttgttgca
aaagcaagtcggtcatcccaatctatgatgcgcaagcctgatccattaacaattactaaa
gttttcaacacatttcaacagattgctaaggaatctgggaaggatagtcaagacaagaaa
aagaaccatatcaaggcacttcttgttgcagccacagactgcgagcctctgtatctaatt
cgtctgcttcagacaaagttgagaattggattggcagaacagactcttttggctgccctg
ggacaagctgctgtatatactgaagagcattctactcctcctccacacattcagtctcct
ttagaagaggctgcaaagattgttaaacaagtttactctgtgcttcctgtctatgataaa
atagtccctgctcttcttagtgatggcgtatggaatcttcccaagacatgcagcttcaca
cctggtgttccagttggacctatgctggcaaaaccaaccaaaggggtttctgagatagta
actaaatttcaggatatggaattcacctgtgaatacaagtatgatggagaacgtgcccag
atacattacttggagaatggttcggttgagatatatagtcgaaattctgagcgaaatact
ggaaaatttcctgatgttgttgctgtaatttcccgattaaagaggccctcggcaagctca
tttattctggattgtgaactagttgcgtatgatagagaaaaaaagaaaattctccccttc
cagatccttagcacccgggcccgaaaaaatgtggtgatgagtgatatcaaggttaatgtt
tgcatatatgccttcgacatgttgtatcttaatgaccaaccacttattcagaaagaactg
aaagttcgtagagagcatctttacagttcattcgaggaagaacctggattttttcagttt
gcaactgcaataacatcaaatgatcttgaagagatacaaaaattcctcgacactgctgtt
gatgccagttgtgagggtttaatcatcaaaacaatgaataaggatgctacatatgaacct
tcaaggcgatcacataactggctgaaattgaagaaagattatatggaaagtattggagac
tcactagatctagtgcctattggtgctttccatggtcgtggaaaacgtacaggtgtctat
ggtgcttttctcctggcttgttataatagcaacaacgaagaattccagagcatatgtaaa
ataggcactggattttctgaacaagtgcttgaggaacgttctgctagtctccgttcacaa
gtgattcccaaaccaaagtcatactatagatttggagatactattaaaccagatgtgtgg
tttgaacccaaggaggtgtgggaggtgaaagcagcagacttgactattagccctgttcat
cgtgctgcaattggtgaagttgatcctaacaagggtatttcactaagatttccacgtctt
gttcgagttcgagaagacaagtctccagagcaagcctcatcatcagagcaggttgctgag
atgtataatgcccaaaagcataatcatcaaaacaatcaagatgacaatgatgatgatgat
gattga

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