Populus nigra (Lombardy poplar): 133680507
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Entry
133680507 CDS
T10372
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133680507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133680507
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133680507
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
133680507
NCBI-ProteinID:
XP_061959478
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Position
19:10846281..10851295
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AA seq
859 aa
AA seq
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METPLNILPLKRAAPNESRFNGNKRMKQMKEKVTDYSDPFAIHGLLDRLDSGRYGSVTDD
IRSLFNRKAQMIHTFLVMYPELANESRGRGMSFSEEKCNVIDLDDGDDDEGGGGNVAAGR
MPVVVIDSDDEVESNENRMAGHFQGIVLPKPEGQFLTDLMFSDLAERRIHGEVVSLTGEP
DITKDKGVYVGVEEDEVDTGIEDDGLGDIWKEMSFALESSKDVVENPQPDENMEEDEDYC
DHSFVLKDDIGYVCRICGVIEKAIDTIIEIQFNKVKRNTRTYMSESCNAKDTDSNGMVGV
DLFEEDLTLTDIPAHPRHMKQMKPHQVEGFNFLRNNLVADNPGGCILAHAPGSGKTFMII
SFMQSFLAKYPHAKPLVVLPKGILSTWKKEFQIWQIEDIPLYDFYSVKADSRHQQLEVLK
QWLEHKSILFLGYKQFSSIICDDGKNQVSVTCQEILLRRPSILILDEGHTPRNENTDVLQ
SLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLRMDTSRGIVKRILSKVNIPGARK
QFKAGADAAFYDLVEHTMQKDQDFKRKVTVIRDLREMTSKVLHYYKGDFLDELPGLVDFT
VVLNLSSKQKHEVQKLKKFAGKFKRSSVGSAVYLHPKLHSFSENSAVTDDMMDNLLETLD
VRDGAKAKFFLNILSLCESAGEKLLVFSQYLTPLKFLERLVMKVKGWILGKDIFVISGES
SSDHREWSMDRFNNSIDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAF
RPGQTKKVYAYRLVAADSPEEEDHTTCFRKEAIAKMWFEWNEYCGYQDFEVETVELDDSG
DCFLESLLVRDDVRLLYKR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggaaactccactgaacattttgcctctaaaacgcgcagctccaaacgagtcgcgtttt
aatggaaataagaggatgaaacagatgaaagaaaaagtaacggattactctgatccattt
gcaattcatggtttgcttgaccggttagatagtgggagatatggaagtgttacggacgat
atacgatcactttttaatcggaaagctcaaatgattcatacctttttggttatgtatcct
gagcttgcgaatgagtcacgtggtcgagggatgagtttcagtgaggaaaagtgtaatgtg
attgatttggatgatggtgatgatgatgagggtggtggtggaaatgttgctgcgggaaga
atgccggttgtggttattgattccgatgacgaagtagagagtaatgagaataggatggct
gggcattttcaggggattgttttgccgaagcccgaggggcaatttcttactgaccttatg
tttagtgaccttgccgagagaagaattcatggagaggtagtaagtcttactggtgaacct
gacatcacaaaagataaaggtgtttatgttggtgtagaggaggatgaagttgatacaggg
attgaagatgatggcctaggagatatttggaaagagatgtcattcgcactggaatcttcc
aaggatgttgttgaaaatcctcaacctgatgaaaacatggaagaagatgaagattattgc
gaccactcttttgtcttgaaggatgatattggttatgtttgtcgcatatgtggggttatt
gagaaagcaattgataccataattgagatccagtttaataaggtcaaaaggaatacaagg
acgtacatgtctgaatcctgcaatgccaaggacacagattcaaatgggatggttggagtt
gatttgtttgaagaagatttgacgctaactgacatccctgctcatccaaggcacatgaag
cagatgaaaccgcatcaagtggaaggtttcaattttcttcgcaataatttggtggcagat
aatccaggggggtgcatcttggcccatgctcctggatctggcaagacatttatgataatc
agtttcatgcaaagtttcctagccaaatatcctcatgcaaaaccattagtggtgcttcca
aaaggaatattgtctacatggaaaaaggagtttcagatatggcagattgaggatattcca
ctttatgatttttactctgttaaagcagacagtaggcatcagcaattggaggtcttaaaa
cagtggttggagcataagagtatccttttcttagggtacaaacagttctcctctataatc
tgtgatgatgggaagaaccaggtgtcagtaacttgccaggagatattgttaaggagacct
tcaattctaattttggacgaagggcacactccgaggaatgagaatacagatgtgttgcaa
tctctagccaaagtgcagacacctcgtaaagttgtgctttctggaaccctctaccaaaat
catgtcaaggaagtgttcaatgtattgaatctagttcgtcctaagtttctgaggatggat
acttcccgaggtattgtcaagcgcatcttgagtaaagtaaacattccaggtgcaaggaag
caattcaaagcaggtgcagatgcagctttctatgatctggtagagcacaccatgcagaaa
gaccaagattttaaaaggaaggtgactgttatacgagatctgcgtgagatgactagcaag
gttcttcattattataaaggagatttcctggatgagcttccaggactggttgattttact
gtagtgctgaatctcagttccaaacagaagcacgaagtgcagaagttgaagaagtttgca
gggaagttcaagagaagttctgttgggagtgctgtttatctacacccaaagttgcactcc
ttctctgagaattctgctgtaactgatgatatgatggataacttgttagagacattagat
gtgagagatggagccaaggcgaaattctttctcaatatattaagcttatgcgagtcagct
ggggagaagctcctggttttcagccagtacctcacaccattgaagttcttagaaagactt
gtgatgaaagtaaagggctggattctgggaaaagatatctttgtgatctcaggggaatca
agttctgatcatcgtgagtggtccatggaccgtttcaataattccatagatgctaaagtt
ttcttcggatctattaaggcatgtggagaagggatatcattggtgggggcttctcgcata
atcatcttagatgttcatcttaatccttcagtaactcgccaggcaataggacgtgcattc
cgacctgggcaaacaaagaaagtgtatgcatataggctggttgctgccgattcaccagaa
gaggaggatcatactacttgcttcaggaaggaagccattgctaaaatgtggttcgagtgg
aatgaatactgtggttaccaggattttgaggtggagactgttgagttggatgacagtgga
gattgcttcttggaaagtttgctggtgagggatgatgtaaggcttctgtataaaaggtag
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