Populus nigra (Lombardy poplar): 133680594
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Entry
133680594 CDS
T10372
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133680594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133680594
03036 Chromosome and associated proteins [BR:
pnz03036
]
133680594
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133680594
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133680594
PBAF complex
133680594
GBAF(ncBAF) complex
133680594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
133680594
NCBI-ProteinID:
XP_061959599
LinkDB
All DBs
Position
19:10449305..10454785
Genome browser
AA seq
1010 aa
AA seq
DB search
MEEKPAGSHAESPASAEPGPSRRRPGGHKRKANSLSNFLSSPLPSKRLTREKAAISNLSN
HNGPFTRARQIPNILASSALSAGLKVEQKVTTAVPDAAALVEEERRSKVEELQTEIEAEF
EVIRSRDSNAHIVPSHCGWFSWTKIHPLEERLLPSFFNGKSQSRTPDTYLEIRNWIMKKF
NSNPNTLIEVKDLSELEVSDLDARREVLEFLDYWGLVNFHPLQFDSAPNADGDEAAKKDS
SLEKLFCFEAIQPCPPIVPKPNLAAPTTSSRLFPESAIAEELAKLEGPSVEYHCNSCSAD
CSRKRYHCQKQADYDLCADCFNNGKFGSNMSSSDFILMEPAEAAGASGGKWTDQETLLLL
EALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDAFFDVTNDMNGTSKVTVDADATVD
GTSGPKDVLDTSESKTGASEDQPLTPPMEASKPEDTSEVKGSQESTENEKSSEVINGPEI
SKSEDASGVKVSEEMGENVALRALTEAFEAVGYSPSPENRLSFSEVGNPVMALASFLTRL
VGPNVATASARSSLKSLSSNYPGLQLAARHCFLLEDPPEERKKPSGSDCVATEMADHDAQ
KDKQEEKNQKENSPTSGLGDRDLSDDHRDKKVGDSVPEEKKPLDSSKGESPEKVNAVNEA
ETAVSHEEVEPCRSKESSNSELPKDHTPSIVKESDEIPPNSACPPSSLKETLEVSSTEEH
SQLTEVAKDVDMVSELKSSEKNEPSQSVASMSVDEHSQAGDASKDVDMVSDSLPADKDGS
QQPAKSNAGDHSQPTESTADVDMLSSQPSEVKPQDLKVESGPTSEEGPKDSKKEKPDSEV
IKDENKIDKIKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLHKLEMKLAFFNE
MDSVIMRVREQLDRSRQRLYQERAQIIASRLGLPPSSRAVPPSLPANRIAMNFANAFPRP
PMSMTAQRPPISRPMGALAPTPGTLVSTTTTAGNSIRPSGQEKLSSVGTK
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaaccggcggggagccacgctgaatcgccggcgtcagctgagcctggacct
tcaaggcgccgacctggagggcacaaaaggaaagcgaattcactctcaaattttctctct
tcacctttaccatcgaaacggctcactcgcgagaaagctgcgatctctaatctctcgaac
cataacggtccttttactagagcgagacaaatccctaacattttggcttcttcggcgctt
tcagcgggcttgaaggtcgagcagaaagtaactacggcggttccggatgctgcggccttg
gtggaggaggagaggaggagtaaggtggaggaattgcaaacagaaattgaagcagagttt
gaggttattagatctcgtgattctaatgctcatattgtgcctagtcattgtggttggttt
tcatggacaaaaattcacccgcttgaggagcgtttactgccttcattctttaatgggaag
tcccaaagccggacaccggatacctatttagagatacgtaattggatcatgaaaaaattt
aattctaatccaaacactcttattgaagtgaaagatttgtcagaacttgaagtttcagac
ttagatgcaaggcgagaggtgctagagttcttagattattggggattagttaactttcat
ccattacaattcgattctgctcccaatgctgatggtgatgaagcggcaaagaaagattca
tctcttgaaaagttgttttgctttgaagccattcaaccatgtccacctattgttcctaaa
cctaacctcgcagctccaactacatcatctagattgtttcctgagtcggcaattgctgaa
gagttggctaagcttgaggggccatctgttgagtaccactgcaattcttgttcagctgat
tgctctcgcaagcgctaccattgccagaagcaggcagattatgatttatgcgctgattgc
tttaataatggaaagtttggctcaaacatgtcctcgtctgattttattctcatggagcct
gctgaggctgctggtgcaagtggtggaaagtggacagatcaggagactctacttctcctt
gaagcactggaactttataaagaaaactggaatgagattgcagaacatgttgccacaaaa
acaaaagctcaatgtatattgcactttgttcaaatgccaattgaggatgccttttttgac
gtcaccaatgatatgaatggcacttccaaagtaacagtagatgctgatgcaaccgttgat
gggacatctggccctaaagatgtccttgatacaagtgagagtaaaacaggtgctagtgaa
gatcaacccctgactcctccaatggaagcttcaaaaccagaagatacaagtgaagtaaaa
ggtagtcaggaaagtacagaaaatgaaaaaagcagtgaggtgattaatggtccggaaatt
tccaaatcagaagatgccagtggagtgaaggttagtgaagaaatgggtgaaaatgttgca
ctcagagctcttacagaagcatttgaagctgttggctattcaccaagtcctgaaaaccga
ctttcattttctgaagttggaaatcctgtcatggctttggcatcatttctgacaagattg
gtgggacctaatgttgctactgcttcagcccgctcttctttgaaatccttgtctagcaac
tatcctggcttgcagctggcagcaaggcattgctttcttttggaagatccaccagaggag
agaaagaaaccatctggcagtgattgtgttgctactgaaatggctgatcatgatgctcaa
aaggacaagcaagaggaaaaaaaccagaaagagaatagccctacctcaggtttaggtgat
agagacctgtcagatgatcacagagacaagaaagttggagactctgttccagaagagaag
aaaccactagattcatcaaagggtgaatccccagagaaagtaaatgctgtaaatgaagca
gagacagctgtctctcacgaggaagttgaaccttgtagatcaaaggaatctagcaattca
gagttaccaaaggaccacacacctagtattgtaaaggaatcggatgagataccacccaat
tcagcgtgtccaccaagttccttgaaggaaacactggaagtatcatcaaccgaagagcat
tctcagcttacagaggtggctaaggatgtggatatggtgtctgaattgaagtcttcagaa
aagaatgagccttctcaatcagttgcatcaatgtcagttgacgaacactctcaagctggt
gatgcatctaaggatgtagacatggtgtcagattctctgcctgcagacaaggatgggtca
cagcaaccagcaaaatcaaatgcaggagaccactctcagcctacagagtcaacagcagat
gtagacatgttatcttcacagccttcagaagtgaagcctcaggatctgaaggttgaaagt
ggacccacttcagaagagggtcccaaagatagtaagaaagagaagcctgacagtgaagtg
attaaagatgaaaataaaattgataaaataaagcgtgctgcagtttcagccctctcagca
gcagcagtgaaggcaaaacttctagcaaaccaggaagaggaccaaatccgacaacttgct
gcctcattgatagagaagcagttacataagttggaaatgaagctagccttctttaatgaa
atggatagtgtaataatgagggtgagggagcaactggacaggtcaaggcagagactttac
caagaacgagctcagataattgcatcccgacttggtttaccaccttcatctagagcagtg
ccaccgtcattacctgccaacagaattgcaatgaactttgcaaatgcatttccgaggcct
ccgatgagcatgactgcccaaaggccaccgatatcaagaccaatgggtgcattggctcca
acccctggcacattagtgtccacaacaactacagcaggaaattcaattcgaccttctggt
caggaaaaactttcttcagttgggacaaagtag
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